View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3751_low_6 (Length: 320)
Name: NF3751_low_6
Description: NF3751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3751_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 7743381 - 7743684
Alignment:
| Q |
1 |
ctaggccaacccaagtgggttatgaaatatctattgttgtttatcacacatacatcatatgatagaattgtcaacnnnnnnnnacatgtgtttcaggctt |
100 |
Q |
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| T |
7743381 |
ctaggccaacccaagtgggttatgaaatatctattgttgtttatcacacatacatcatatgataaaattgtcaacttttttttacatgtgtttcaggctt |
7743480 |
T |
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| Q |
101 |
gcaaaggtcttcgcaatatatttggacgacaaataactcttgttccaatgagagaaatgactaatgtgctgtcagttgaaagcaaggccattgatcttgc |
200 |
Q |
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| T |
7743481 |
gcaaaggtcttcgcaatatatt-ggacgacaaataactcttgttccaataagagaaatgactgatgtgctgtcagttgaaagcaaggccattgatcttgc |
7743579 |
T |
|
| Q |
201 |
tagagatacttggattagaatgaagattgggacatacaagggggaccttgccaaagtatgtactgtattcttggacattcatcattctatccctattctt |
300 |
Q |
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| T |
7743580 |
tagagatacttggattagaatgaagattgggacatacaagggggaccttgccaaagtatgtactgtattcttggacattcatcattctatccctattctt |
7743679 |
T |
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| Q |
301 |
aattt |
305 |
Q |
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| T |
7743680 |
aattt |
7743684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 158; Significance: 5e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 85 - 294
Target Start/End: Original strand, 40864990 - 40865199
Alignment:
| Q |
85 |
catgtgtttcaggcttgcaaaggtcttcgcaatatatttggacgacaaataactcttgttccaatgagagaaatgactaatgtgctgtcagttgaaagca |
184 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | ||||||| || |||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
40864990 |
catgtgtttcaggcttgcaaaggtcttcgcaatatatttggacaaaaaataacactcgttccaataagagaaatgactgatgtgctgtcagttgaaagca |
40865089 |
T |
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| Q |
185 |
aggccattgatcttgctagagatacttggattagaatgaagattgggacatacaagggggaccttgccaaagtatgtactgtattcttggacattcatca |
284 |
Q |
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| T |
40865090 |
aagccattgatcttgctagagatacttgggttagaatgaagattgggacatacaagggggaccttgccaaagtatgcactgtattctgggaaattcatga |
40865189 |
T |
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| Q |
285 |
ttctatccct |
294 |
Q |
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||||||||| |
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| T |
40865190 |
ctctatccct |
40865199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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