View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3752_high_1 (Length: 476)
Name: NF3752_high_1
Description: NF3752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3752_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 3 - 465
Target Start/End: Original strand, 30791473 - 30791921
Alignment:
| Q |
3 |
tatgttgaagacatattatgcttatgtgactccaagatatctggaaagagaaattattttgatattttgtgattcaagtgaagtaatcaaaatttcaacg |
102 |
Q |
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| T |
30791473 |
tatgttgaagatatattatgcttatttgactccaagatatctggaaagagaaattattttgatattttgtgattcaagtgaagtaatcaaaatttcaacg |
30791572 |
T |
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| Q |
103 |
tatcaatatatctattggaccagcgtaaatgcacaatgtgagcttccttttgattcaaataggagtgaaaatgaaaggtgaaactagaatgaacagaatt |
202 |
Q |
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| T |
30791573 |
tatcaatatatctattggaccagcgtaaatgcacaatgtgagctttcttttgattcaaataggagtgaaaatgaaaggtgaaactagaatgaacagaatt |
30791672 |
T |
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| Q |
203 |
aatttaacatgacattgtttctagacacatacgtgcatatgatatatagatatatttgaatagaatttcctattgctttttatggtcccttctctgtttt |
302 |
Q |
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| T |
30791673 |
aatttaacatgacattgtttctagacacatacgtgcatatgatatatagatatatttgaatagaatttcctattgctttttatggtcccttctctgtttt |
30791772 |
T |
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| Q |
303 |
cttttttactccttacnnnnnnnntggagaattctcttaaaccaagaaaaactcattcctagtagaacggcgccacacgaaacaaagaagaataaaatat |
402 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30791773 |
------------ttacaaaaaaaatggagaat--tcttaaaccaagaaaaactcattcctagtagaacggcgccacacgaaacaaagaagaataaaatat |
30791858 |
T |
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| Q |
403 |
aactttgtttctgtcctgtgaagtggtgagtcgtgcttgtgcaaaacagccaaccaatttcat |
465 |
Q |
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| T |
30791859 |
aactttgtttctgtcctgtgaagtggtgaatcgtgcttgtgcaaaacagccaaccaatttcat |
30791921 |
T |
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