View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3752_high_3 (Length: 353)
Name: NF3752_high_3
Description: NF3752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3752_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 151 - 343
Target Start/End: Original strand, 11895444 - 11895634
Alignment:
| Q |
151 |
tcacttgcaggtacacaaaaagcacatttcaatggatttatttttaatctatacttttcctcattctctcaaaggattgtcgaaggttgtctaaatgact |
250 |
Q |
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| T |
11895444 |
tcacttgcaggtacacaaaaagcacatttgaatggattcatttttaatctata--tttcctcattcccttaaaggattgtcgaaggttgtttaaatgact |
11895541 |
T |
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| Q |
251 |
atttttcaacgaggattttacgactatgtcgtcaatgtatactagcataaaggtataaataaaatcatgaaacatagaattcattgccctttg |
343 |
Q |
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| T |
11895542 |
atttttcaacgaggattttacgactatgtcgtcaatgtttactagcataaaggtataaataaaatcatgaaacataaaattcattgccctttg |
11895634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 11895211 - 11895348
Alignment:
| Q |
20 |
gccttttgatgctcttgctcccacttgaaactatcttcatcttgcagtcgaactaatgacgaaaatgcttgnnnnnnnnccactt-------agataaac |
112 |
Q |
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| T |
11895211 |
gccttttgatgctcttgctcccacttgaaactatcttcatttttcagtcgaactaatgacgaaaatgcttg-tttttttccacttaaatttgagataaac |
11895309 |
T |
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| Q |
113 |
ctccttaggaagttt-atttttctagcaatgactgaaat |
150 |
Q |
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| T |
11895310 |
ctccttaggaagtttaatttttccagcaatgactgaaat |
11895348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 343
Target Start/End: Original strand, 17806954 - 17806988
Alignment:
| Q |
309 |
ataaaatcatgaaacatagaattcattgccctttg |
343 |
Q |
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| T |
17806954 |
ataaaatcatgaaacatagaattcattgctctttg |
17806988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 343
Target Start/End: Original strand, 25114401 - 25114435
Alignment:
| Q |
309 |
ataaaatcatgaaacatagaattcattgccctttg |
343 |
Q |
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||||||||||||||||||||||||||||| ||||| |
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| T |
25114401 |
ataaaatcatgaaacatagaattcattgctctttg |
25114435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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