View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3752_high_4 (Length: 300)

Name: NF3752_high_4
Description: NF3752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3752_high_4
NF3752_high_4
[»] chr8 (3 HSPs)
chr8 (18-300)||(259342-259624)
chr8 (18-300)||(656297-656579)
chr8 (18-300)||(842032-842314)


Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 259342 - 259624
Alignment:
Q  18 aaatattcaattgatatcattgtagttnnnnnnnnnngtttatttctgacatataaagaattgttgagccctattcagatcgaggagagtaagagagcat 117  Q
    |||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  259342 aaatattcaattgatatcattgtagttaaaaaaaaa-gtttatttctgacatataaagaattgttgagccctattcagatcgaggagagtaagagagcat 259440  T
Q  118 tttatcctattatttggatttgtgtttgagaagtgagattaaattactctaaacgtgctttagtgataaatattgatatttgactaatttgtcatttaca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  259441 tttatcctattatttggatttgtgtttgagaagtgagattaaattactctaaacgtgctttagtgataaatattgatatttgactaatttgtcatttaca 259540  T
Q  218 tccatcgacctaattctctctatttgactattttttcaaatgcaaacaat-aactcattgcatttgttgtacacttctgcctat 300  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  259541 tccatcgacttaattctctctatttgactattttttcaaatgcaaacaataaactcattgcatttgttgtacacgtctgcctat 259624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 656579 - 656297
Alignment:
Q  18 aaatattcaattgatatcattgtagttnnnnnnnnnngtttatttctgacatataaagaattgttgagccctattcagatcgaggagagtaagagagcat 117  Q
    |||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  656579 aaatattcaattgatatcattgtagttaaaaaaaaa-gtttatttctgacatataaagaattgttgagccctattcagatcgaggagagtaagagagcat 656481  T
Q  118 tttatcctattatttggatttgtgtttgagaagtgagattaaattactctaaacgtgctttagtgataaatattgatatttgactaatttgtcatttaca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  656480 tttatcctattatttggatttgtgtttgagaagtgagattaaattactctaaacgtgctttagtgataaatattgatatttgactaatttgtcatttaca 656381  T
Q  218 tccatcgacctaattctctctatttgactattttttcaaatgcaaacaat-aactcattgcatttgttgtacacttctgcctat 300  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  656380 tccatcgacttaattctctctatttgactattttttcaaatgcaaacaataaactcattgcatttgttgtacacgtctgcctat 656297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 842314 - 842032
Alignment:
Q  18 aaatattcaattgatatcattgtagttnnnnnnnnnngtttatttctgacatataaagaattgttgagccctattcagatcgaggagagtaagagagcat 117  Q
    |||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  842314 aaatattcaattgatatcattgtagttaaaaaaaaa-gtttatttctgacatataaagaattgttgagccctattcagatcgaggagagtaagagagcat 842216  T
Q  118 tttatcctattatttggatttgtgtttgagaagtgagattaaattactctaaacgtgctttagtgataaatattgatatttgactaatttgtcatttaca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  842215 tttatcctattatttggatttgtgtttgagaagtgagattaaattactctaaacgtgctttagtgataaatattgatatttgactaatttgtcatttaca 842116  T
Q  218 tccatcgacctaattctctctatttgactattttttcaaatgcaaacaat-aactcattgcatttgttgtacacttctgcctat 300  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  842115 tccatcgacttaattctctctatttgactattttttcaaatgcaaacaataaactcattgcatttgttgtacacgtctgcctat 842032  T

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