View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3752_low_3 (Length: 357)
Name: NF3752_low_3
Description: NF3752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3752_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 343
Target Start/End: Original strand, 225525 - 225850
Alignment:
| Q |
18 |
atatgtaaggccatgaatctcctgaaatcattagcatacaacatcaatttgtgaaacattaatataattataaactataaactacatacaatccgaacca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
225525 |
atatgtaaggccatgaatctcctgaaatcattagcatacaacatcaatttgtgaaacattaatataattataaactataaactatatacaatccgaacta |
225624 |
T |
|
| Q |
118 |
gaatcctgattgtaacaatctttgatcaagttttacttaccttctggctaaacctggaggaataggtccaggccaagtttgagaaggattggtgaatgga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
225625 |
gaatcctgattgtaacaatctttgatcaagttttacttaccttctggctaaacctggaggaataggtccaggccaagtttgagaaggattggtgaatgga |
225724 |
T |
|
| Q |
218 |
tagatgtgagaaagagcagcttgccaaaaacattcagttcgaaaaagagatgcccactgcttcttcacacatgatatttgtgtccaatcactcactcctg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
225725 |
tagatgtgagaaagagcagcttgccaaaaacattcagttcggaaaagagatgcccactgcttcttcacacatgatatttgtgtccaatcactcacttctg |
225824 |
T |
|
| Q |
318 |
ctcttatgaatatctctatcatcaca |
343 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
225825 |
ttcttatgaatatctctatcatcaca |
225850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 343
Target Start/End: Original strand, 233125 - 233441
Alignment:
| Q |
18 |
atatgtaaggccatgaatctcctgaaatcattagcatacaacatcaatttgtgaaacattaatataattataaactataaactacatacaatccgaacca |
117 |
Q |
| |
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||||||| || ||||||| ||||||||| |||| ||||||| |||||||||||||||| ||||||| |||||||||||||| |||| |||| |
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| T |
233125 |
atatgtatggtcatgaatatcctgaaattattaacatacaatatcaatttgtgaaacactaatata--------ctataaactacatagaatcagaactc |
233216 |
T |
|
| Q |
118 |
gaatcctgattgtaacaatctttgatcaagttttacttaccttctggctaaacctggaggaataggtccaggccaagtttgagaaggattggtgaatgga |
217 |
Q |
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||||||||| ||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
233217 |
aaatcctgatagtaacaatctta-atcaagttttacttactttctgactaaacctggaggaataggtctaggccaagtttgagaaggattggtgaatgga |
233315 |
T |
|
| Q |
218 |
tagatgtgagaaagagcagcttgccaaaaacattcagttcgaaaaagagatgcccactgcttcttcacacatgatatttgtgtccaatcactcactcctg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
233316 |
tagatgtgagaaagagcagcttgccaaaaacattcagttcgaaaaagagatgcccactgcttcttcacacatgatatttgtgtccaatcactcacttctg |
233415 |
T |
|
| Q |
318 |
ctcttatgaatatctctatcatcaca |
343 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
233416 |
ttcttatgaatatctctatcatcaca |
233441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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