View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3752_low_6 (Length: 244)

Name: NF3752_low_6
Description: NF3752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3752_low_6
NF3752_low_6
[»] chr3 (20 HSPs)
chr3 (1-236)||(17749184-17749419)
chr3 (1-236)||(19050504-19050739)
chr3 (15-232)||(28047452-28047669)
chr3 (4-206)||(27464248-27464450)
chr3 (15-207)||(28129985-28130177)
chr3 (15-232)||(27909833-27910050)
chr3 (2-232)||(27962890-27963120)
chr3 (30-232)||(27998628-27998830)
chr3 (72-232)||(11408886-11409046)
chr3 (72-208)||(28079496-28079632)
chr3 (15-202)||(28143913-28144100)
chr3 (79-232)||(28178126-28178279)
chr3 (72-203)||(28492244-28492375)
chr3 (72-203)||(28472203-28472334)
chr3 (15-238)||(28513190-28513413)
chr3 (6-59)||(18081253-18081306)
chr3 (1-61)||(27773373-27773433)
chr3 (1-55)||(27401382-27401439)
chr3 (1-59)||(26239528-26239586)
chr3 (1-53)||(26117270-26117322)
[»] chr4 (4 HSPs)
chr4 (15-232)||(9330120-9330337)
chr4 (15-232)||(9383903-9384120)
chr4 (144-232)||(9329826-9329914)
chr4 (144-232)||(9383609-9383697)
[»] chr7 (1 HSPs)
chr7 (1-232)||(8694545-8694776)
[»] chr5 (1 HSPs)
chr5 (15-135)||(26027162-26027282)
[»] scaffold0067 (1 HSPs)
scaffold0067 (69-201)||(24045-24177)
[»] scaffold0854 (1 HSPs)
scaffold0854 (14-55)||(4429-4470)


Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 17749419 - 17749184
Alignment:
Q  1 ctaagcatattgcttctcaagtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaaaatttgaaagaattgttcaatggccctct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17749419 ctaagcatattgcttctcaagtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaaaatttgaaagaattgttcaatggccctct 17749320  T
Q  101 ttcttttgactctctaaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17749319 ttcttttgactctctaaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaag 17749220  T
Q  201 agtgtgtcgctggaaacatgcccgatgatgatgtcc 236  Q
    |||||||||||||||| |||||||||| ||||||||    
T  17749219 agtgtgtcgctggaaaaatgcccgatgttgatgtcc 17749184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 19050739 - 19050504
Alignment:
Q  1 ctaagcatattgcttctcaagtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaaaatttgaaagaattgttcaatggccctct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19050739 ctaagcatattgcttctcaagtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaaaatttgaaagaattgttcaatggccctct 19050640  T
Q  101 ttcttttgactctctaaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19050639 ttcttttgactctctaaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaag 19050540  T
Q  201 agtgtgtcgctggaaacatgcccgatgatgatgtcc 236  Q
    |||||||||||||||| |||||||||| ||||||||    
T  19050539 agtgtgtcgctggaaaaatgcccgatgttgatgtcc 19050504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 15 - 232
Target Start/End: Original strand, 28047452 - 28047669
Alignment:
Q  15 tctcaagtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaaaatttgaaagaattgttcaatggccctctttcttttgactctc 114  Q
    ||||||||| |||  |||||||||| |||||||| |||  |||||||||  |||||||||||| ||||||||| |||||| |||||||| ||||||||||    
T  28047452 tctcaagtatcaacggtcttctccaagttggttgaacttcatctttggaacctagaaaatttggaagaattgtgcaatggtcctctttcctttgactctc 28047551  T
Q  115 taaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcgctgga 214  Q
    | |||||||||||| || |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  28047552 tgaacagtttagaggagctgtccatcaaggattgtaaacatttgaaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtatcgttgga 28047651  T
Q  215 aacatgcccgatgatgat 232  Q
    |  |||||||||| ||||    
T  28047652 aggatgcccgatgttgat 28047669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 4 - 206
Target Start/End: Complemental strand, 27464450 - 27464248
Alignment:
Q  4 agcatattgcttctcaagtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaaaatttgaaagaattgttcaatggccctctttc 103  Q
    |||||| || ||||||| | |||||||||||||||| |||||||||||||||||||||||  |||||||||||| |||||||||||||||| ||| ||||    
T  27464450 agcatactgattctcaatttccaaatgtcttctccaagttggttgtactagatctttggaacctagaaaatttggaagaattgttcaatggtcctgtttc 27464351  T
Q  104 ttttgactctctaaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagt 203  Q
     |||||||||||||||| |||||||||||||||||||||| | ||  |||||||||| ||||||||||||||||| |||||||| | |||| | ||||||    
T  27464350 ctttgactctctaaacaatttagagaagttgtccatcaagaactgtgaacatttgcagagcttatttaagtgcaagctaaacctctgcaatttgaagagt 27464251  T
Q  204 gtg 206  Q
    |||    
T  27464250 gtg 27464248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 28129985 - 28130177
Alignment:
Q  15 tctcaagtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaaaatttgaaagaattgttcaatggccctctttcttttgactctc 114  Q
    ||||||||  |||| |||||||||| ||||||||||||||| |||||||  | ||| |||||| |||||||||||||||| |||||||| ||||||||||    
T  28129985 tctcaagtgtcaaaagtcttctccaagttggttgtactagaactttggaaccaagataatttggaagaattgttcaatggtcctctttcctttgactctc 28130084  T
Q  115 taaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgt 207  Q
    | || |||||| || ||||||||||||  ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28130085 tgaaaagtttaaaggagttgtccatcagtgattgtaaacatttgaaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgt 28130177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 15 - 232
Target Start/End: Original strand, 27909833 - 27910050
Alignment:
Q  15 tctcaagtaccaaatgtcttctccatgttggttgtactagatctttggaggc-tagaaaatttgaaagaattgttcaatggccctctttcttttgactct 113  Q
    ||||||||| |||| |||||||||| ||||||||||||||| ||  | |||  | || |||||| |||||||||||||||| |||||||| |||||||||    
T  27909833 tctcaagtatcaaaagtcttctccaagttggttgtactagagctc-gaaggaatggataatttggaagaattgttcaatggtcctctttcctttgactct 27909931  T
Q  114 ctaaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcgctgg 213  Q
    || |||||||||||| |  |||||||||   |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||    
T  27909932 ctgaacagtttagaggatctgtccatcagtaattgcaaacatttgaaaagcttatttaagtgcaaactaaacctattcaatctaaagagtgtgtcgttgg 27910031  T
Q  214 aaacatgcccgatgatgat 232  Q
    ||| |||||||||| ||||    
T  27910032 aaagatgcccgatgttgat 27910050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 2 - 232
Target Start/End: Original strand, 27962890 - 27963120
Alignment:
Q  2 taagcatattgcttctcaagtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaaaatttgaaagaattgttcaatggccctctt 101  Q
    ||||||| |||  ||||||||| |||| |||||||||| ||||||||  ||||| ||| |||  |||||||||||| |||||||||||||||| ||| |     
T  27962890 taagcattttgaatctcaagtaacaaaagtcttctccaagttggttggcctagaacttaggaacctagaaaatttggaagaattgttcaatggtcctttg 27962989  T
Q  102 tcttttgactctctaaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaaga 201  Q
    || ||||||||| | ||||||||||||||  | |||||  | ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27962990 tcctttgactctttgaacagtttagagaatctttccattgaagattgtaaacatttgaaaagcttatttaagtgcaacctaaacctattcaatctaaaga 27963089  T
Q  202 gtgtgtcgctggaaacatgcccgatgatgat 232  Q
    |||||||  |||||  |||||||||| ||||    
T  27963090 gtgtgtcattggaaggatgcccgatgttgat 27963120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 30 - 232
Target Start/End: Original strand, 27998628 - 27998830
Alignment:
Q  30 gtcttctccatgttggttgtactagatctttggaggctagaaaatttgaaagaattgttcaatggccctctttcttttgactctctaaacagtttagaga 129  Q
    |||||||||| ||||||||| ||||| |||||||  ||||| |||||| ||||||| | |||||| |||||||| ||||||||||| |||||||||||||    
T  27998628 gtcttctccaagttggttgtgctagaactttggaacctagataatttggaagaattatgcaatggtcctctttcctttgactctctgaacagtttagaga 27998727  T
Q  130 agttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcgctggaaacatgcccgatgat 229  Q
    || ||| |||||   |||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||  |||||||||| |    
T  27998728 agctgtacatcatcaattgtaaacatttgaaaagcttatttaagtgcaaactaaacctattcaatctaaagagcgtgttgctggaaggatgcccgatgtt 27998827  T
Q  230 gat 232  Q
    |||    
T  27998828 gat 27998830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 72 - 232
Target Start/End: Original strand, 11408886 - 11409046
Alignment:
Q  72 aatttgaaagaattgttcaatggccctctttcttttgactctctaaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttattta 171  Q
    |||||| ||||||||||||||||| ||||||| ||||||||||| ||||||||||||||| |||||||||||||||| | | ||||| ||||||||||||    
T  11408886 aatttggaagaattgttcaatggctctctttcctttgactctctgaacagtttagagaagctgtccatcaaggattgtacaaatttgaaaagcttattta 11408985  T
Q  172 agtgcaacctaaacctattcaatctaaagagtgtgtcgctggaaacatgcccgatgatgat 232  Q
    ||||||||||||||||||||||||||||||| |||| | || ||| |||||||||| ||||    
T  11408986 agtgcaacctaaacctattcaatctaaagagcgtgttgttgaaaagatgcccgatgttgat 11409046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 72 - 208
Target Start/End: Original strand, 28079496 - 28079632
Alignment:
Q  72 aatttgaaagaattgttcaatggccctctttcttttgactctctaaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttattta 171  Q
    |||||| |||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||  ||||| ||||||||| ||||||||||||    
T  28079496 aatttggaagaattgttcaatggtcctctttcctttgactctctgaacagtttagagaagttgtccatcagtgattgtaaacatttgaaaagcttattta 28079595  T
Q  172 agtgcaacctaaacctattcaatctaaagagtgtgtc 208  Q
    ||||||| |||||||||||||||||||||||||||||    
T  28079596 agtgcaaactaaacctattcaatctaaagagtgtgtc 28079632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 15 - 202
Target Start/End: Original strand, 28143913 - 28144100
Alignment:
Q  15 tctcaagtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaaaatttgaaagaattgttcaatggccctctttcttttgactctc 114  Q
    ||||||||  |||| |||||||||| ||||||||||||| | |||||||  | | | |||||| |||||||||||||||| |||||||| ||||||||||    
T  28143913 tctcaagtgtcaaaagtcttctccaagttggttgtactaaaactttggaaccaacataatttggaagaattgttcaatggtcctctttcctttgactctc 28144012  T
Q  115 taaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagag 202  Q
    | |||  ||||||||||||||||||| | ||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  28144013 tgaactttttagagaagttgtccatccaagattgtaaacatttgaaaagcttatttaagtgcaaactaaacctattcaatctaaagag 28144100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 79 - 232
Target Start/End: Original strand, 28178126 - 28178279
Alignment:
Q  79 aagaattgttcaatggccctctttcttttgactctctaaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaa 178  Q
    |||||||||||||||| ||| |||| ||||||||||| ||||||||||||||| |||||||||| || || ||||||||  |||||||||||||||||||    
T  28178126 aagaattgttcaatggtcctgtttcctttgactctctgaacagtttagagaagctgtccatcaatgaatgtaaacatttaaaaagcttatttaagtgcaa 28178225  T
Q  179 cctaaacctattcaatctaaagagtgtgtcgctggaaacatgcccgatgatgat 232  Q
    ||||||||| | ||||||||||||| | ||  |||||  |||||||||| ||||    
T  28178226 cctaaacctctgcaatctaaagagtctttcattggaagaatgcccgatgttgat 28178279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 72 - 203
Target Start/End: Complemental strand, 28492375 - 28492244
Alignment:
Q  72 aatttgaaagaattgttcaatggccctctttcttttgactctctaaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttattta 171  Q
    |||||| ||||||||||||| || |||||||| ||||||||||| ||||||||||||||  |||||||  ||||||| ||||||||| ||| |||||||     
T  28492375 aatttggaagaattgttcaaaggtcctctttcctttgactctctgaacagtttagagaatctgtccattgaggattgtaaacatttgaaaatcttatttg 28492276  T
Q  172 agtgcaacctaaacctattcaatctaaagagt 203  Q
    |||||||| ||||||| | |||||||||||||    
T  28492275 agtgcaacataaacctctgcaatctaaagagt 28492244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 72 - 203
Target Start/End: Complemental strand, 28472334 - 28472203
Alignment:
Q  72 aatttgaaagaattgttcaatggccctctttcttttgactctctaaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttattta 171  Q
    |||||| ||||||||||||  || |||||||| ||||||||||| ||||||||||||||  |||||||  ||||||| ||||||||| ||| |||||||     
T  28472334 aatttggaagaattgttcagcggtcctctttcctttgactctctgaacagtttagagaatctgtccattgaggattgtaaacatttgaaaatcttatttg 28472235  T
Q  172 agtgcaacctaaacctattcaatctaaagagt 203  Q
    |||||||| ||||||| | |||||||||||||    
T  28472234 agtgcaacataaacctctgcaatctaaagagt 28472203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 28513413 - 28513190
Alignment:
Q  15 tctcaagtaccaaatgtcttctccatgttggttgtactagatctttggaggc-tagaaaatttgaaagaattgttcaatggccctctttcttttgactct 113  Q
    ||||||||| |||| |||||||||| ||||| ||||||||| ||  | |||  | || |||||| ||||||||||||| || |||||||| |||||||||    
T  28513413 tctcaagtatcaaaagtcttctccaagttggctgtactagaactc-gaaggaatggataatttggaagaattgttcaaaggtcctctttcctttgactct 28513315  T
Q  114 ctaaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcgctgg 213  Q
    || ||||||||||||||  |||||||  || |||| |||| |||| ||| ||||||  |||||||| ||||||| | ||||||||||||| | ||  |||    
T  28513314 ctgaacagtttagagaatctgtccattgagaattgtaaacgtttgaaaatcttattcgagtgcaacataaacctctgcaatctaaagagtctttcattgg 28513215  T
Q  214 aaacatgcccgatgatgatgtccat 238  Q
    ||  |||||||||| |||| |||||    
T  28513214 aacgatgcccgatgttgatctccat 28513190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 18081306 - 18081253
Alignment:
Q  6 catattgcttctcaagtaccaaatgtcttctccatgttggttgtactagatctt 59  Q
    ||||||| |||||||||||||| ||||||||||| ||||||||||||| |||||    
T  18081306 catattgattctcaagtaccaactgtcttctccaagttggttgtactacatctt 18081253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 27773373 - 27773433
Alignment:
Q  1 ctaagcatattgcttctcaagtaccaaatgtcttctccatgttggttgtactagatctttg 61  Q
    |||||||||||| ||||||| |||||||||| |||||  |||||||||| ||| |||||||    
T  27773373 ctaagcatattggttctcaactaccaaatgttttctctttgttggttgtgctacatctttg 27773433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 27401439 - 27401382
Alignment:
Q  1 ctaagcatattgcttctcaagtaccaaatgt---cttctccatgttggttgtactaga 55  Q
    |||| ||||||| ||||||||||||||||||   |||||||| |||||||||||||||    
T  27401439 ctaaacatattgattctcaagtaccaaatgttgtcttctccaagttggttgtactaga 27401382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 26239586 - 26239528
Alignment:
Q  1 ctaagcatattgcttctcaagtaccaaatgtcttctccatgttggttgtactagatctt 59  Q
    |||| ||||||  |||||||||||||| ||| ||||||| ||||||||||||| |||||    
T  26239586 ctaaacatattaattctcaagtaccaattgttttctccaagttggttgtactaaatctt 26239528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 26117322 - 26117270
Alignment:
Q  1 ctaagcatattgcttctcaagtaccaaatgtcttctccatgttggttgtacta 53  Q
    |||| ||||||  |||||||||||||| ||| ||||||| |||||||||||||    
T  26117322 ctaaacatattaattctcaagtaccaattgttttctccaagttggttgtacta 26117270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 15 - 232
Target Start/End: Complemental strand, 9330337 - 9330120
Alignment:
Q  15 tctcaagtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaaaatttgaaagaattgttcaatggccctctttcttttgactctc 114  Q
    ||||||||| |||| |||||||||| |||||||||||||||||||       ||||||||||| |||||||||||||||| |||||||| |||||||||     
T  9330337 tctcaagtatcaaaagtcttctccaagttggttgtactagatcttaatgaattagaaaatttggaagaattgttcaatggtcctctttcctttgactctt 9330238  T
Q  115 taaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcgctgga 214  Q
    | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||    
T  9330237 tgaacagtttagagaagctgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagcgtgtcgttaga 9330138  T
Q  215 aacatgcccgatgatgat 232  Q
    |  |||||||||| ||||    
T  9330137 aggatgcccgatgttgat 9330120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 15 - 232
Target Start/End: Complemental strand, 9384120 - 9383903
Alignment:
Q  15 tctcaagtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaaaatttgaaagaattgttcaatggccctctttcttttgactctc 114  Q
    ||||||||| |||| |||||||||| |||||||||||||||||||       ||||||||||| |||||||||||||||| |||||||| |||||||||     
T  9384120 tctcaagtatcaaaagtcttctccaagttggttgtactagatcttaatgaattagaaaatttggaagaattgttcaatggtcctctttcctttgactctt 9384021  T
Q  115 taaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcgctgga 214  Q
    | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||    
T  9384020 tgaacagtttagagaagctgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagcgtgtcgttaga 9383921  T
Q  215 aacatgcccgatgatgat 232  Q
    |  |||||||||| ||||    
T  9383920 aggatgcccgatgttgat 9383903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 9329914 - 9329826
Alignment:
Q  144 gattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcgctggaaacatgcccgatgatgat 232  Q
    ||||| ||||||||| |||| ||||| ||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||| ||||    
T  9329914 gattgtaaacatttgaaaagtttattcaagtgcaacataaacctattcaatctaaagagtgtgtcgttggaaagatgcccgatgttgat 9329826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 9383697 - 9383609
Alignment:
Q  144 gattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcgctggaaacatgcccgatgatgat 232  Q
    ||||| ||||||||| |||| ||||| ||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||| ||||    
T  9383697 gattgtaaacatttgaaaagtttattcaagtgcaacataaacctattcaatctaaagagtgtgtcgttggaaagatgcccgatgttgat 9383609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 8694776 - 8694545
Alignment:
Q  1 ctaagcatattgcttctcaagtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaaaatttgaaagaattgttcaatggccctct 100  Q
    |||||||||||| |||||| ||| ||| ||||||||||| ||| |||||||||| |||     |  | || |||||| ||||||||| |||||| |||||    
T  8694776 ctaagcatattgattctcatgtatcaattgtcttctccaagttagttgtactagttctcaaaggaatggataatttggaagaattgtgcaatggtcctct 8694677  T
Q  101 ttcttttgactctctaaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaag 200  Q
    ||| ||||||||||| || |||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8694676 ttcctttgactctctgaaaagtttagagaagctgtacatcaaggattgtaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaag 8694577  T
Q  201 agtgtgtcgctggaaacatgcccgatgatgat 232  Q
    || |||||| || ||| ||| |||||| ||||    
T  8694576 agcgtgtcgttgaaaagatgtccgatgttgat 8694545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 26027282 - 26027162
Alignment:
Q  15 tctcaagtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaaaatttgaaagaattgttcaatggccctctttcttttgactctc 114  Q
    ||||||||| |||| |||||||||| |||| |||||||||||||||  |  |||||||||||| |||||||||||||||| |||||||| ||||||||||    
T  26027282 tctcaagtatcaaaagtcttctccaagttgattgtactagatctttctaacctagaaaatttggaagaattgttcaatggtcctctttcctttgactctc 26027183  T
Q  115 taaacagtttagagaagttgt 135  Q
    | |||||||||||||||||||    
T  26027182 tcaacagtttagagaagttgt 26027162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 201
Target Start/End: Original strand, 24045 - 24177
Alignment:
Q  69 gaaaatttgaaagaattgttcaatggccctctttcttttgactctctaaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttat 168  Q
    ||||||||| ||||| |||| ||||| ||  |||| ||||||| ||| || | |||| ||||| | || ||||||||||| ||||||||||||||||| |    
T  24045 gaaaatttggaagaactgtttaatggtcccgtttcctttgactttctgaagaatttacagaagatatcaatcaaggattgtaaacatttgcaaagcttgt 24144  T
Q  169 ttaagtgcaacctaaacctattcaatctaaaga 201  Q
    |||| | | | | |||||| | |||||||||||    
T  24145 ttaaattcgagcaaaacctctgcaatctaaaga 24177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0854 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0854
Description:

Target: scaffold0854; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 4470 - 4429
Alignment:
Q  14 ttctcaagtaccaaatgtcttctccatgttggttgtactaga 55  Q
    |||| ||||||||| ||||||||||| |||||||||||||||    
T  4470 ttctgaagtaccaagtgtcttctccaagttggttgtactaga 4429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University