View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3752_low_7 (Length: 240)
Name: NF3752_low_7
Description: NF3752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3752_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 259625 - 259822
Alignment:
| Q |
1 |
tgctgcttattccattgaaaaaagaaccagtgttcttactcgtgcgatgcacatataactttatttgtgattgattgttatagaatatataatttctttg |
100 |
Q |
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| T |
259625 |
tgctgcttattccgttgaaaaaagaaccagtgttcttactcgtgcgatgcacatataactttatttgtgattgtttgttatagaatatataatttcttt- |
259723 |
T |
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| Q |
101 |
ttgcattttaaaattggtacatcaattttgcacaactttcaagataattatatgtatcattcatgtgttataaaagataaaataatgtcaatcatattt |
199 |
Q |
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| T |
259724 |
ttgcattttaaaattggtacatcaattttgcacaactttcaagataattatatgtatcattcatgtgttataaaagataaaataatgtcaatcatattt |
259822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 656296 - 656099
Alignment:
| Q |
1 |
tgctgcttattccattgaaaaaagaaccagtgttcttactcgtgcgatgcacatataactttatttgtgattgattgttatagaatatataatttctttg |
100 |
Q |
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| T |
656296 |
tgctgcttattccgttgaaaaaagaaccagtgttcttactcgtgcgatgcacatataactttatttgtgattgtttgttatagaatatataatttcttt- |
656198 |
T |
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| Q |
101 |
ttgcattttaaaattggtacatcaattttgcacaactttcaagataattatatgtatcattcatgtgttataaaagataaaataatgtcaatcatattt |
199 |
Q |
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| T |
656197 |
ttgcattttaaaattggtacatcaattttgcacaactttcaagataattatatgtatcattcatgtgttataaaagataaaataatgtcaatcatattt |
656099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 842031 - 841834
Alignment:
| Q |
1 |
tgctgcttattccattgaaaaaagaaccagtgttcttactcgtgcgatgcacatataactttatttgtgattgattgttatagaatatataatttctttg |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
842031 |
tgctgcttattccgttgaaaaaagaaccagtgttcttactcgtgcgatgcacatataactttatttgtgattgtttgttatagaatatataatttcttt- |
841933 |
T |
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| Q |
101 |
ttgcattttaaaattggtacatcaattttgcacaactttcaagataattatatgtatcattcatgtgttataaaagataaaataatgtcaatcatattt |
199 |
Q |
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| T |
841932 |
ttgcattttaaaattggtacatcaattttgcacaactttcaagataattatatgtatcattcatgtgttataaaagataaaataatgtcaatcatattt |
841834 |
T |
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