View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3752_low_8 (Length: 238)
Name: NF3752_low_8
Description: NF3752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3752_low_8 |
 | |
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| [»] chr3 (17 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] scaffold0067 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 17)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 238
Target Start/End: Complemental strand, 17749637 - 17749410
Alignment:
| Q |
11 |
atcatcaaagtgtgtgtttcttaaagttagagatgacattttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaaga |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
17749637 |
atcatcaaagtgtgtgtttcttaaagttagaattgacattttcctatctgaaacaacactcaagtactgtatgcaagaagcagaggtgcttaaactaaga |
17749538 |
T |
|
| Q |
111 |
agaatcgaggggggatggagaaatatcatacctgatattgttccgttgaatcaaggtatgaatgatttagttgagcttgaattacaatttatttcacaac |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
17749537 |
agaatcgaggggggatggagaaatatcatacctgatattgttccgttgaatcaaggtatgaatgatttagttgagcttcaattacaatttatttcacaac |
17749438 |
T |
|
| Q |
211 |
tgcggtgcctcattgacactaagcatat |
238 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
17749437 |
tgcggtgcctcattgacactaagcatat |
17749410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 238
Target Start/End: Complemental strand, 19050957 - 19050730
Alignment:
| Q |
11 |
atcatcaaagtgtgtgtttcttaaagttagagatgacattttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaaga |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19050957 |
atcatcaaagtgtgtgtttcttaaagttagaattgacattttcctatctgaaacaacactcaagtactgtatgcaagaagcagaggtgcttaaactaaga |
19050858 |
T |
|
| Q |
111 |
agaatcgaggggggatggagaaatatcatacctgatattgttccgttgaatcaaggtatgaatgatttagttgagcttgaattacaatttatttcacaac |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19050857 |
agaatcgaggggggatggagaaatatcatacctgatattgttccgttgaatcaaggtatgaatgatttagttgagcttcaattacaatttatttcacaac |
19050758 |
T |
|
| Q |
211 |
tgcggtgcctcattgacactaagcatat |
238 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
19050757 |
tgcggtgcctcattgacactaagcatat |
19050730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 48 - 236
Target Start/End: Original strand, 27909638 - 27909826
Alignment:
| Q |
48 |
attttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgata |
147 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
27909638 |
attttcctatctgaaacaacactcaagtactgtatgcaagaagcagaggttattagactaagaagaatcgaggggggatggagaaatatcatacctgaga |
27909737 |
T |
|
| Q |
148 |
ttgttccgttgaatcaaggtatgaatgatttagttgagcttgaattacaatttatttcacaactgcggtgcctcattgacactaagcat |
236 |
Q |
| |
|
| |||| ||||| || |||||||||||| |||||||||||||||| || ||||||||| | | |||||| ||||||||||||||| |
|
|
| T |
27909738 |
tgattcctttgaaacatggtatgaatgatctagttgagcttgaattgagatccatttcacaattacagtgccttattgacactaagcat |
27909826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 44 - 237
Target Start/End: Complemental strand, 27464638 - 27464445
Alignment:
| Q |
44 |
tgacattttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacct |
143 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||| |||||| ||||||||||||||||| ||||||||| |
|
|
| T |
27464638 |
tgacattttcctatctgaaacaacactcaagtactgtatgcaagaagcagaggttcttagactaacaagaatggaggggggatggagaaacatcatacct |
27464539 |
T |
|
| Q |
144 |
gatattgttccgttgaatcaaggtatgaatgatttagttgagcttgaattacaatttatttcacaactgcggtgcctcattgacactaagcata |
237 |
Q |
| |
|
|| |||||||| || |||| |||||||||||| |||| |||||| | || || |||||||| ||| ||||||||||||||| |||||| |
|
|
| T |
27464538 |
gagattgttcctatggatcatggtatgaatgatctagtcgagcttaatttgatatccatttcacagttgcactgcctcattgacactcagcata |
27464445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 50 - 235
Target Start/End: Original strand, 28079246 - 28079431
Alignment:
| Q |
50 |
tttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgatatt |
149 |
Q |
| |
|
||||||||| ||||||||||| |||||||| | |||||||||||||| |||| ||| || ||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
28079246 |
tttcctatccaaaacaacactcgagtactgttttcaagaagcagaggttcttagacttggaggaatcgaaggggggtggagaaatatcatacctgatatt |
28079345 |
T |
|
| Q |
150 |
gttccgttgaatcaaggtatgaatgatttagttgagcttgaattacaatttatttcacaactgcggtgcctcattgacactaagca |
235 |
Q |
| |
|
||||| || |||| |||||||||||| |||||||||||||||| || ||||||||| | | ||||||||||||||||||||| |
|
|
| T |
28079346 |
gttccaatggatcatggtatgaatgatctagttgagcttgaattgagatccatttcacaattacagtgcctcattgacactaagca |
28079431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 49 - 188
Target Start/End: Original strand, 28143719 - 28143858
Alignment:
| Q |
49 |
ttttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgatat |
148 |
Q |
| |
|
|||||||| ||||||||||||||||||| || || |||||||||||||| |||| |||||||||||||||||||| ||||| ||| ||||||||||| || |
|
|
| T |
28143719 |
ttttcctaactgaaacaacactcaagtattgcatgcaagaagcagaggttcttagactaagaagaatcgagggggaatggaaaaacatcatacctgagat |
28143818 |
T |
|
| Q |
149 |
tgttccgttgaatcaaggtatgaatgatttagttgagctt |
188 |
Q |
| |
|
|||||| || ||||||||||||||||| ||||||||||| |
|
|
| T |
28143819 |
tgttcccatggatcaaggtatgaatgatatagttgagctt |
28143858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 49 - 235
Target Start/End: Original strand, 28129791 - 28129977
Alignment:
| Q |
49 |
ttttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgatat |
148 |
Q |
| |
|
|||||||| |||||| |||||||||||| ||||| |||||||||||||| ||| |||||||||||||||||||| ||||| ||| ||||||||||| || |
|
|
| T |
28129791 |
ttttcctaactgaaagaacactcaagtattgtatgcaagaagcagaggttcttgcactaagaagaatcgagggggaatggaaaaacatcatacctgagat |
28129890 |
T |
|
| Q |
149 |
tgttccgttgaatcaaggtatgaatgatttagttgagcttgaattacaatttatttcacaactgcggtgcctcattgacactaagca |
235 |
Q |
| |
|
|||||| || ||||||||||||||||| ||||||||||| || || ||||||||| | | ||||||||||||||||||||| |
|
|
| T |
28129891 |
tgttcccatggatcaaggtatgaatgatatagttgagcttcgtttgggatccatttcacaattacagtgcctcattgacactaagca |
28129977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 49 - 232
Target Start/End: Original strand, 28177877 - 28178060
Alignment:
| Q |
49 |
ttttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgatat |
148 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||| ||| ||||| |||||||||||||||| |||||||| ||| ||||||| || |
|
|
| T |
28177877 |
ttttcctatctgaaacaacactcaagtattgtatgcaagaagcagaggttcttgaactaggaagaatcgagggggggtggagaaacatcgtacctgagat |
28177976 |
T |
|
| Q |
149 |
tgttccgttgaatcaaggtatgaatgatttagttgagcttgaattacaatttatttcacaactgcggtgcctcattgacactaa |
232 |
Q |
| |
|
|||||| || |||| |||||||||||| || | ||||||| || || ||||||||| | | |||||||||||||||||| |
|
|
| T |
28177977 |
tgttcctctggatcatggtatgaatgatctaatcgagcttggtttgagatccatttcacaattacagtgcctcattgacactaa |
28178060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 42 - 237
Target Start/End: Original strand, 11408628 - 11408823
Alignment:
| Q |
42 |
gatgacattttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatac |
141 |
Q |
| |
|
||||| ||||||||||| |||||||||||| ||| ||||| ||| || ||||||| |||| |||| ||||||||| ||||| ||||||||||||||||| |
|
|
| T |
11408628 |
gatgagattttcctatccaaaacaacactcatgtattgtatgcaaaaatcagaggttcttagactaggaagaatcgtgggggaatggagaaatatcatac |
11408727 |
T |
|
| Q |
142 |
ctgatattgttccgttgaatcaaggtatgaatgatttagttgagcttgaattacaatttatttcacaactgcggtgcctcattgacactaagcata |
237 |
Q |
| |
|
|||| || ||||| || ||||||||||||||||| ||||||||||| | ||| || ||||||||||| |||||||||||||||| ||||| |
|
|
| T |
11408728 |
ctgaaatggttcctttagatcaaggtatgaatgatctagttgagcttcatttaagatgcatttcacaactaaaatgcctcattgacactatgcata |
11408823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 49 - 237
Target Start/End: Original strand, 27998431 - 27998619
Alignment:
| Q |
49 |
ttttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgatat |
148 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||| |||||||||||||| ||||| ||| ||||| ||||||||| ||||||||||||||||||| || |
|
|
| T |
27998431 |
ttttcctatctaaaacaacactcaaggactgtatgcaagaagcagaggttcttaagataaatagaatggaggggggagggagaaatatcatacctgagat |
27998530 |
T |
|
| Q |
149 |
tgttccgttgaatcaaggtatgaatgatttagttgagcttgaattacaatttatttcacaactgcggtgcctcattgacactaagcata |
237 |
Q |
| |
|
|||| || ||| |||||||||||| ||||||||||||| || || ||||||||| | | |||||||||||||||||||||| |
|
|
| T |
27998531 |
gattcctatgggtcatggtatgaatgatctagttgagcttgatttgagatccatttcacaattacaatgcctcattgacactaagcata |
27998619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 49 - 181
Target Start/End: Complemental strand, 28492626 - 28492494
Alignment:
| Q |
49 |
ttttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgatat |
148 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||| ||| ||||||||| || |||||||||||||||||||| || ||||| || |
|
|
| T |
28492626 |
ttttcctatctgaaacaacactcaagtattgtatgcaagaagcagaggttcttggactaagaaggatggaggggggatggagaaatatgatgcctgagat |
28492527 |
T |
|
| Q |
149 |
tgttccgttgaatcaaggtatgaatgatttagt |
181 |
Q |
| |
|
|||||| || |||| |||||||||||| |||| |
|
|
| T |
28492526 |
tgttcctatggatcatggtatgaatgatctagt |
28492494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 41 - 188
Target Start/End: Original strand, 27962701 - 27962848
Alignment:
| Q |
41 |
agatgacattttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcata |
140 |
Q |
| |
|
|||||| ||||||||||| |||||| ||| |||||||||| | |||||||||||| | ||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27962701 |
agatgatattttcctatccgaaacatcacacaagtactgtttgcaagaagcagagtttcttggactaagaagaatggaggggggatggagaaatatcata |
27962800 |
T |
|
| Q |
141 |
cctgatattgttccgttgaatcaaggtatgaatgatttagttgagctt |
188 |
Q |
| |
|
||||| |||||||| || | || |||||||||||| |||| |||||| |
|
|
| T |
27962801 |
cctgagattgttcctatggagcatggtatgaatgatctagtcgagctt |
27962848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 49 - 188
Target Start/End: Complemental strand, 28472585 - 28472446
Alignment:
| Q |
49 |
ttttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgatat |
148 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||| |||||||||||||| |||| ||||||||| || |||||||||||||||||||| || ||||| || |
|
|
| T |
28472585 |
ttttcctatgtgaaacaacactcaagtattgtatgcaagaagcagaggttcttagactaagaaggatggaggggggatggagaaatatgatgcctgagat |
28472486 |
T |
|
| Q |
149 |
tgttccgttgaatcaaggtatgaatgatttagttgagctt |
188 |
Q |
| |
|
|||||| || | || |||||||||||| |||| |||||| |
|
|
| T |
28472485 |
tgttcctatggaccatggtatgaatgatctagtcgagctt |
28472446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 49 - 237
Target Start/End: Original strand, 27952010 - 27952198
Alignment:
| Q |
49 |
ttttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgatat |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||| ||| | ||||||||||||||||| | ||||||||| |||| ||||||| |||| |
|
|
| T |
27952010 |
ttttcctatctgaaacaacactcaagtactgtatgcaaacagctgagattcttaaactaagaagaatacaaaggggatggataaatctcatacccaatat |
27952109 |
T |
|
| Q |
149 |
tgttccgttgaatcaaggtatgaatgatttagttgagcttgaattacaatttatttcacaactgcggtgcctcattgacactaagcata |
237 |
Q |
| |
|
|||| || || |||||||||||| || ||| ||||||| || || | ||||||||||| | || |||||||||||||||||||| |
|
|
| T |
27952110 |
tgtttcgatgcatcaaggtatgagaaatatagctgagcttagtttgcattgcatttcacaacttcagttcctcattgacactaagcata |
27952198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 49 - 188
Target Start/End: Complemental strand, 28513607 - 28513468
Alignment:
| Q |
49 |
ttttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgatat |
148 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||| |||||||| ||| | || | |||||||||||| |||||||||||||||||||| || ||||| || |
|
|
| T |
28513607 |
ttttcctatctgaaacaacactcaggtattgtatgcaagaagctgagattctaagactaagaagaatggaggggggatggagaaatatgattcctgaaat |
28513508 |
T |
|
| Q |
149 |
tgttccgttgaatcaaggtatgaatgatttagttgagctt |
188 |
Q |
| |
|
|||||| || || |||||||||||| |||| |||||| |
|
|
| T |
28513507 |
tgttcctatggattgtggtatgaatgatctagtcgagctt |
28513468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 50 - 173
Target Start/End: Original strand, 28047273 - 28047396
Alignment:
| Q |
50 |
tttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgatatt |
149 |
Q |
| |
|
||||||||| |||||||| || |||||||| | |||||||||||||| |||| ||| ||| |||| || || | |||||||||||||||||||||||| |
|
|
| T |
28047273 |
tttcctatccaaaacaacattcgagtactgtttgcaagaagcagaggttcttagacttagaggaattgaaaggtggtggagaaatatcatacctgatatt |
28047372 |
T |
|
| Q |
150 |
gttccgttgaatcaaggtatgaat |
173 |
Q |
| |
|
||||| ||| |||| ||||||||| |
|
|
| T |
28047373 |
gttcctttggatcatggtatgaat |
28047396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 49 - 173
Target Start/End: Complemental strand, 27435029 - 27434905
Alignment:
| Q |
49 |
ttttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgatat |
148 |
Q |
| |
|
||||| |||||||||||||||| | ||| ||| | |||||||||||||| |||| ||||||||| ||||| ||| |||||||||| ||||||| || || |
|
|
| T |
27435029 |
ttttcttatctgaaacaacactaaggtattgtctgcaagaagcagaggttcttagactaagaagcttcgagagggaatggagaaatctcatacccgagat |
27434930 |
T |
|
| Q |
149 |
tgttccgttgaatcaaggtatgaat |
173 |
Q |
| |
|
|||| | || |||||||||||||| |
|
|
| T |
27434929 |
tgtttctatggatcaaggtatgaat |
27434905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 49 - 238
Target Start/End: Complemental strand, 8694956 - 8694767
Alignment:
| Q |
49 |
ttttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgatat |
148 |
Q |
| |
|
||||||| ||| ||| |||||| ||||||||||| |||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8694956 |
ttttcctttctcaaataacacttaagtactgtatgcaagcagcagaggttcttagactaagaagaatcgaggggggatggagaaatatcatacctgagat |
8694857 |
T |
|
| Q |
149 |
tgttccgttgaatcaaggtatgaatgatttagttgagcttgaattacaatttatttcacaactgcggtgcctcattgacactaagcatat |
238 |
Q |
| |
|
|||||| | |||| |||||||||||| ||||||||||| | ||| || ||||||||||| | |||||| | |||||||||||||| |
|
|
| T |
8694856 |
tgttcctatcgatcatggtatgaatgatctagttgagcttcatttaagatgcatttcacaactacaatgcctcttagacactaagcatat |
8694767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 42 - 176
Target Start/End: Complemental strand, 9330538 - 9330404
Alignment:
| Q |
42 |
gatgacattttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatac |
141 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||||| |||||| |||||| ||| | | | ||||||||| ||| |||||||| ||||||| |
|
|
| T |
9330538 |
gatgactttttcctatctgaaacaacactcaagtattgtatgcaagaatcagagggtattagattgtgtagaatcgagagggtgtggagaaacatcatac |
9330439 |
T |
|
| Q |
142 |
ctgatattgttccgttgaatcaaggtatgaatgat |
176 |
Q |
| |
|
|||| |||||||| ||| ||||||||||||||||| |
|
|
| T |
9330438 |
ctgagattgttcctttggatcaaggtatgaatgat |
9330404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 42 - 176
Target Start/End: Complemental strand, 9384321 - 9384187
Alignment:
| Q |
42 |
gatgacattttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatac |
141 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||||| |||||| |||||| ||| | | | ||||||||| ||| |||||||| ||||||| |
|
|
| T |
9384321 |
gatgactttttcctatctgaaacaacactcaagtattgtatgcaagaatcagagggtattagattgtgtagaatcgagagggtgtggagaaacatcatac |
9384222 |
T |
|
| Q |
142 |
ctgatattgttccgttgaatcaaggtatgaatgat |
176 |
Q |
| |
|
|||| |||||||| ||| ||||||||||||||||| |
|
|
| T |
9384221 |
ctgagattgttcctttggatcaaggtatgaatgat |
9384187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 49 - 188
Target Start/End: Complemental strand, 26027476 - 26027337
Alignment:
| Q |
49 |
ttttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgatat |
148 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||| ||||||||||| | |||| ||||| ||| || ||||| || |||||||||||||| ||||| || |
|
|
| T |
26027476 |
ttttcctatctgaaacaacactcgagtattgtatgcaagaagcagaaattcttagactaacaaggattgagggagggtggagaaatatcatgcctgagat |
26027377 |
T |
|
| Q |
149 |
tgttccgttgaatcaaggtatgaatgatttagttgagctt |
188 |
Q |
| |
|
||||| || |||| |||||||||||| |||| |||||| |
|
|
| T |
26027376 |
tgttcatatggatcatggtatgaatgatctagtcgagctt |
26027337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 49 - 184
Target Start/End: Original strand, 23797 - 23932
Alignment:
| Q |
49 |
ttttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgatat |
148 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||| ||| | | ||||| |||| |||||||||||||||| ||||||||||||| ||||||| | || |
|
|
| T |
23797 |
ttttcttatctgaagcaacactcaagtactgtatgcaaacaaccgaggttcttagactaagaagaatcgagacgggatggagaaatctcataccccagat |
23896 |
T |
|
| Q |
149 |
tgttccgttgaatcaaggtatgaatgatttagttga |
184 |
Q |
| |
|
|||| | || ||||||||||||| ||| ||||||| |
|
|
| T |
23897 |
tgtttctatggatcaaggtatgaaagatatagttga |
23932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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