View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3753_high_6 (Length: 272)
Name: NF3753_high_6
Description: NF3753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3753_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 5697153 - 5697414
Alignment:
| Q |
1 |
ctatgagaataccttaaaacttgttcaatatattcattcttctcctaatccaatggcacaacttttgcctggaagaactgtgttagataccaaaccagca |
100 |
Q |
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| T |
5697153 |
ctatgagaataccttaaaacttgttcaatatattcattcttctcctaatccaatggcacaacttttgcctggaagaactgtgttagataccaaaccagca |
5697252 |
T |
|
| Q |
101 |
ccctctatggccatgttctctagcagaggtcccaacataatttaccctaatattctaaaggtgattcctttttcacaatattaattgtttcactttataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5697253 |
ccctctatggccatgttctctagcagaggtcccaacataattgaccctaatattctaaaggtgattcctttttcacaatattaattgtttcactttataa |
5697352 |
T |
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| Q |
201 |
taagatattatattataaaagatatatgtgtaaattttacatcaatttgtttgtactctctg |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5697353 |
taagatattatattataaaagatatatgtgtaaattttacatcaatttgtttgtactctctg |
5697414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 5684983 - 5685144
Alignment:
| Q |
1 |
ctatgagaataccttaaaacttgttcaatatattcattcttctcctaatccaatggcacaacttttgcctggaagaactgtgttagataccaaaccagca |
100 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5684983 |
ctatgagaataccttaaaattagttcaatatattcattcttctcctaatccaatggcacaacttttgcctggaagaactgtgttagataccaaaccagca |
5685082 |
T |
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| Q |
101 |
ccctctatggccatgttctctagcagaggtcccaacataatttaccctaatattctaaaggt |
162 |
Q |
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| T |
5685083 |
ccctctatggccatcttctctagtagaggtcccaatattattgaccctaatattctaaaggt |
5685144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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