View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3753_high_7 (Length: 252)
Name: NF3753_high_7
Description: NF3753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3753_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 53 - 243
Target Start/End: Original strand, 22812878 - 22813068
Alignment:
| Q |
53 |
aaaagtgagtactgattaactttctttaaaatgattgagaaggagaacaaatctctgatctaattggatgtttattgggaggaggaggaggtattggttt |
152 |
Q |
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| T |
22812878 |
aaaattgagtactaattaactttatttaaaatgattgagaaggagaataaatctctgatctaattggatgtttattgggagggggaggaggtattggttt |
22812977 |
T |
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| Q |
153 |
aagtttggtatggattgaagatgatagggtttctggtaaattaatagacgattgcatggaaaagatagaggtttggtatggattgatgatg |
243 |
Q |
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| T |
22812978 |
aagtttggtatggattgaagatgatagggtttctggtaaattaatagacaattgaatggcgaagataaatgtttggtatggattgaagatg |
22813068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 53 - 243
Target Start/End: Complemental strand, 39688798 - 39688608
Alignment:
| Q |
53 |
aaaagtgagtactgattaactttctttaaaatgattgagaaggagaacaaatctctgatctaattggatgtttattgggaggaggaggaggtattggttt |
152 |
Q |
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| T |
39688798 |
aaaattgagtactaattaactttatttaaaatgattgagaaggagaataaatctctgatctaattggatgtttattgggatgaggaggaggtattggttt |
39688699 |
T |
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| Q |
153 |
aagtttggtatggattgaagatgatagggtttctggtaaattaatagacgattgcatggaaaagatagaggtttggtatggattgatgatg |
243 |
Q |
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| T |
39688698 |
aagtttggtacggattgaagatgatagggtttctggtaaattaatagacaattgaatggcgaagataaatgtttggtatggattgaagatg |
39688608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 39688821 - 39688789
Alignment:
| Q |
17 |
agatctgaccaaaaccgcgtttcaaaattgagt |
49 |
Q |
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| T |
39688821 |
agatctgaccaaaaccgcgtttcaaaattgagt |
39688789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 60 - 236
Target Start/End: Original strand, 2214642 - 2214815
Alignment:
| Q |
60 |
agtactgattaactttctttaaaatgattgagaaggagaacaaatctctgatctaattggatgtttattgggaggaggaggaggtattggtttaagtttg |
159 |
Q |
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| T |
2214642 |
agtactaattaactttatttaaaatgattgagaaggagaacaaatctctgatctaattggatgtttattgggag---gaggaggtattggtttaagtttg |
2214738 |
T |
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| Q |
160 |
gtatggattgaagatgatagggtttctggtaaattaatagacgattgcatggaaaagatagaggtttggtatggatt |
236 |
Q |
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| T |
2214739 |
gtatggattgaagatgatagtgtttctggtaaattaatagacgattgaatggcgaagataaaggtttggtatggatt |
2214815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 21843862 - 21843975
Alignment:
| Q |
17 |
agatctgaccaaaaccgcgtttcaaaattgagtgtaaaaagtgagtactgattaactttctttaaaatgattgagaaggagaacaaatctctgatctaat |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
21843862 |
agatctgaccaaaaccgcgtttcaaaattgagtgtaaaatttgagtactaattaactttatgtaaaatgattgagaaggagaacaaatctctgatctaat |
21843961 |
T |
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| Q |
117 |
tggatgtttattgg |
130 |
Q |
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| T |
21843962 |
tgggtgtttattgg |
21843975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 21844043 - 21844135
Alignment:
| Q |
146 |
ttggtttaagtttggtatggattgaagatgatagggtttctggtaaattaatagacgattgcatggaaaagatagaggtttggtatggattga |
238 |
Q |
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| T |
21844043 |
ttggtttttgtttggtatggatttaagataatagggtttttggaaaattaatggaagattgaatgaagaagataaatgtttggtatggattga |
21844135 |
T |
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