View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3753_low_1 (Length: 603)
Name: NF3753_low_1
Description: NF3753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3753_low_1 |
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| [»] chr4 (4 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 521; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 1 - 603
Target Start/End: Original strand, 56325592 - 56326193
Alignment:
| Q |
1 |
ctctagatagtagatagtggataccatgttgaagttgtgagattttagataaaggaggagagaaaataaaataaaaatattgatataattgataatgact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56325592 |
ctctagatagtagatagtggataccatgttgaagttgtgagattttagataaaggaggagagaaaataaaataaaaatattgatataattgataatgact |
56325691 |
T |
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| Q |
101 |
tggtacgaaagactaaatagtaatctctatttatagagatacacacactcgatcctaaataaataagaaaattggggaaaacagtaataatactaagcaa |
200 |
Q |
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| T |
56325692 |
tagtacgaaagactaaacagtaatctctctttatagagatacacacactcgatcctaaataaataagaaaattggggaaaacagtaataatactaagcaa |
56325791 |
T |
|
| Q |
201 |
caggtatgtaaaataatcataggtgataatctaagatacatcaaaattgaaaactaatcatatgggataaaccaagacattccataataataccaagata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
56325792 |
caggtatgtaaaataatcataggtgataatctaagatacatcaaaattgaaaactaatcatatgggataaaccaagacattccataataatatcaagata |
56325891 |
T |
|
| Q |
301 |
ttatccgannnnnnnnccaacaactctcgttcctccatcgcatctcatgtactaaccnnnnnnntaactgaaacgagaatgaaaaatttagcatattttt |
400 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
56325892 |
ttatccga-tttttttccaacaactctcgttcctccatcgcatctcatgtactaaccaaaaaaataactgaaacgagaatgaaaaatttagcgtatttac |
56325990 |
T |
|
| Q |
401 |
gcttgcttcaagcacctatgtaggtgacatcaagtattgggtactagaaaattaaaagaagaatgtagaagagaggattaaacaaaatagccaaggcaat |
500 |
Q |
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| T |
56325991 |
gcttgcttcaagcacctatgtaggtgacatcaagtattgggtactagaaaattaaaagaagaatgtagaagagaggattaaacaaaatagccaaggcaat |
56326090 |
T |
|
| Q |
501 |
cagagagtggtcagtctctccaaaagagtcccaactatttctggccgtatctcccccaattcatacccgtctccttgcaaccaaataacacacccactac |
600 |
Q |
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| T |
56326091 |
cagagagtggtcagtctctccaaaagagtcccaactatttctggccgtatctcccccaattcatacccgtccccttgcaaccaaataacacacccactac |
56326190 |
T |
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| Q |
601 |
tgc |
603 |
Q |
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||| |
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| T |
56326191 |
tgc |
56326193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 23302522 - 23302587
Alignment:
| Q |
109 |
aagactaaatagtaatctctatttatagagatacacacactcg--atcctaaataaataagaaaatt |
173 |
Q |
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| T |
23302522 |
aagactaaatactaatctctatttatagaaataca-aaactcgtaatcctaaataaataggaaaatt |
23302587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 37040812 - 37040877
Alignment:
| Q |
78 |
tattgatataattgataatgacttggtacgaaagactaaatagtaatctctatttatagagataca |
143 |
Q |
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|||||||| ||||||| | ||||| ||| |||||||||| | |||||||||||||||| |||||| |
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| T |
37040812 |
tattgataatattgatactaacttgatacaaaagactaaacactaatctctatttatagggataca |
37040877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 15588106 - 15588058
Alignment:
| Q |
22 |
taccatgttgaagttgtgagattttagata-aaggaggagagaaaataa |
69 |
Q |
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|||||||||||||||||| ||||||||||| |||| |||||||||||| |
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| T |
15588106 |
taccatgttgaagttgtgtgattttagatagaaggtagagagaaaataa |
15588058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 51
Target Start/End: Complemental strand, 29438 - 29407
Alignment:
| Q |
20 |
gataccatgttgaagttgtgagattttagata |
51 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
29438 |
gataccatgttgaagttgtgagattttagata |
29407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 27907403 - 27907442
Alignment:
| Q |
30 |
tgaagttgtgagattttagataaaggaggagagaaaataa |
69 |
Q |
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|||||||||||||||||||||||||| |||||||||||| |
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| T |
27907403 |
tgaagttgtgagattttagataaaggtagagagaaaataa |
27907442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 31681296 - 31681353
Alignment:
| Q |
108 |
aaagactaaatagtaatctctatttatagagatacacacactcgatcctaaataaata |
165 |
Q |
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||||||||| |||||| |||||||||||||||||| | ||||| |||||||||||| |
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| T |
31681296 |
aaagactaagcagtaatatctatttatagagatacataggctcgaccctaaataaata |
31681353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 34746855 - 34746899
Alignment:
| Q |
26 |
atgttgaagttgtgagattttagat-aaaggaggagagaaaataa |
69 |
Q |
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|||||||| ||||| |||||||||| ||||||||||||||||||| |
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| T |
34746855 |
atgttgaatttgtgggattttagataaaaggaggagagaaaataa |
34746899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 53
Target Start/End: Complemental strand, 14305632 - 14305604
Alignment:
| Q |
25 |
catgttgaagttgtgagattttagataaa |
53 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
14305632 |
catgttgaagttgtgagattttagataaa |
14305604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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