View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3753_low_2 (Length: 492)

Name: NF3753_low_2
Description: NF3753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3753_low_2
NF3753_low_2
[»] chr5 (26 HSPs)
chr5 (1-205)||(41337480-41337684)
chr5 (295-492)||(41337220-41337417)
chr5 (5-212)||(41328733-41328940)
chr5 (5-212)||(41332666-41332873)
chr5 (7-212)||(41286859-41287063)
chr5 (5-212)||(41316692-41316899)
chr5 (7-157)||(41366900-41367050)
chr5 (5-175)||(31177937-31178107)
chr5 (7-138)||(41310967-41311102)
chr5 (7-212)||(41324756-41324961)
chr5 (5-174)||(31188000-31188169)
chr5 (300-468)||(41316335-41316503)
chr5 (7-152)||(41431967-41432112)
chr5 (346-468)||(31188434-31188556)
chr5 (300-469)||(41332314-41332483)
chr5 (300-408)||(41286404-41286512)
chr5 (347-468)||(31225257-31225378)
chr5 (24-184)||(31225599-31225759)
chr5 (300-468)||(41328302-41328470)
chr5 (300-469)||(41366494-41366660)
chr5 (356-468)||(31178399-31178511)
chr5 (300-468)||(41324404-41324572)
chr5 (62-159)||(14235865-14235962)
chr5 (376-455)||(41369839-41369918)
chr5 (304-468)||(41310595-41310759)
chr5 (417-462)||(41431274-41431319)
[»] chr4 (2 HSPs)
chr4 (7-202)||(17248819-17249014)
chr4 (300-464)||(17249076-17249240)


Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 41337684 - 41337480
Alignment:
Q  1 cctaaatgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttttatcaaacactcttcttacctcaact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41337684 cctaaatgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttttatcaaacactcttcttacctcaact 41337585  T
Q  101 tgtgcttcttccattactattgggttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttcgctgccagcaatgaacaagtcctgca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41337584 tgtgcttcttccattactattgggttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttcgctgccagcaatgaacaagtcctgca 41337485  T
Q  201 aatgg 205  Q
    |||||    
T  41337484 aatgg 41337480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 295 - 492
Target Start/End: Complemental strand, 41337417 - 41337220
Alignment:
Q  295 agtaaactaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggt 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41337417 agtaaactaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggt 41337318  T
Q  395 cttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtc 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41337317 cttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtc 41337220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 5 - 212
Target Start/End: Complemental strand, 41328940 - 41328733
Alignment:
Q  5 aatgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttttatcaaacactcttcttacctcaacttgtg 104  Q
    |||||||||||||||||  ||||||||||| |||| || |||||||||||||| || |||||| ||||||||||||||||||| ||||| ||| ||||||    
T  41328940 aatgtttctttgatgacggactttaagtatatcaattggtgcaactctgtctcatccacatactcctttttatcaaacactctacttacttcatcttgtg 41328841  T
Q  105 cttcttccattactattgggttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttcgctgccagcaatgaacaagtcctgcaaatg 204  Q
    |||||||||||||  |||||||||| | |||||| ||||||||||||| || ||    ||||||||||||| | ||||||| ||||| ||||| ||||||    
T  41328840 cttcttccattacctttgggttcttcaccatctcagacatcgcccataacagaacctgtgacgatgtttcggtaccagcaaggaacatgtcctacaaatg 41328741  T
Q  205 gaataaca 212  Q
    || |||||    
T  41328740 gattaaca 41328733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 5 - 212
Target Start/End: Complemental strand, 41332873 - 41332666
Alignment:
Q  5 aatgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttttatcaaacactcttcttacctcaacttgtg 104  Q
    ||||||||||||| |||| ||||||||||| |||| || |||||||||| ||| || |||||||||||||||||||||||||||||||| ||||  ||||    
T  41332873 aatgtttctttgacgacagactttaagtatatcaattggtgcaactctgactcatccacatacccctttttatcaaacactcttcttacttcaatctgtg 41332774  T
Q  105 cttcttccattactattgggttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttcgctgccagcaatgaacaagtcctgcaaatg 204  Q
    ||||||||| |||  |||||||||||| |||||| ||||||||||||| ||  |   |||||||||||||| | |||||||||||||  |||| ||||||    
T  41332773 cttcttccaatacctttgggttctttaccatctcagacatcgcccataacaatacctctgacgatgtttcggtaccagcaatgaacatatcctacaaatg 41332674  T
Q  205 gaataaca 212  Q
    || |||||    
T  41332673 gattaaca 41332666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 7 - 212
Target Start/End: Complemental strand, 41287063 - 41286859
Alignment:
Q  7 tgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttttatcaaacactcttcttacctcaacttgtgct 106  Q
    |||||||||||| ||| |||| |||||| |||| || ||||||||||||||  | |||||||||||| ||||||||||||||||||||||| ||||||||    
T  41287063 tgtttctttgataacagacttcaagtatatcaattggtgcaactctgtctcaaccacatacccctttctatcaaacactcttcttacctcagcttgtgct 41286964  T
Q  107 tcttccattactattgggttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttcgctgccagcaatgaacaagtcctgcaaatgga 206  Q
    | |||||| ||  |||| ||||||| |||||| |||||| | |||| ||||   ||||||||||||||||  |||||| ||||||||||||| |||||||    
T  41286963 t-ttccatcacctttggattctttaccatctcagacatccctcataacacagcccctgacgatgtttcgccaccagcagtgaacaagtcctgtaaatgga 41286865  T
Q  207 ataaca 212  Q
     |||||    
T  41286864 ttaaca 41286859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 5 - 212
Target Start/End: Complemental strand, 41316899 - 41316692
Alignment:
Q  5 aatgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttttatcaaacactcttcttacctcaacttgtg 104  Q
    |||||||||||||||||| ||||||||||| |||| || | |||||||||||| || ||||| |||||||||||||||||||||||||| ||| ||||||    
T  41316899 aatgtttctttgatgacagactttaagtatatcaattggtacaactctgtctcatccacatatccctttttatcaaacactcttcttacttcagcttgtg 41316800  T
Q  105 cttcttccattactattgggttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttcgctgccagcaatgaacaagtcctgcaaatg 204  Q
    ||| |||||||||  ||| ||| |||| |||| | ||||||||||| | ||||    |||||||||||||  | ||||||   |||| ||||||||||||    
T  41316799 cttgttccattacatttgagttttttaccatcgcagacatcgcccaaatcacagcctctgacgatgtttcagtaccagcaccaaacatgtcctgcaaatg 41316700  T
Q  205 gaataaca 212  Q
    || |||||    
T  41316699 gattaaca 41316692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 7 - 157
Target Start/End: Complemental strand, 41367050 - 41366900
Alignment:
Q  7 tgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttttatcaaacactcttcttacctcaacttgtgct 106  Q
    |||||||||||||||  | ||||||||| |||| || |||||||||||||| |  ||||| |||||||||||||||||||||||||||||||||||||||    
T  41367050 tgtttctttgatgacggattttaagtatatcaattggtgcaactctgtctcattcacatatccctttttatcaaacactcttcttacctcaacttgtgct 41366951  T
Q  107 tcttccattactattgggttctttatcatctccgacatcgcccatagcaca 157  Q
     |||||||||| || || ||||||| |||||| ||||||| ||||| ||||    
T  41366950 gcttccattaccatcggattctttaccatctcagacatcgtccataacaca 41366900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 5 - 175
Target Start/End: Original strand, 31177937 - 31178107
Alignment:
Q  5 aatgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttttatcaaacactcttcttacctcaacttgtg 104  Q
    |||||||||||||| | | ||||||||||| |||| || ||||||||||| || || |||| ||||||||||||||||||| ||||||| ||| ||||||    
T  31177937 aatgtttctttgattatagactttaagtatatcaaatggtgcaactctgtttcatcgacatgcccctttttatcaaacacttttcttacttcagcttgtg 31178036  T
Q  105 cttcttccattactattgggttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttcg 175  Q
    |||| | |||||   ||||||||||||||||||| || ||| |||||| ||||| |||||| |||||||||    
T  31178037 cttccttcattatctttgggttctttatcatctcagatatcccccataacacaactcctgatgatgtttcg 31178107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 7 - 138
Target Start/End: Complemental strand, 41311102 - 41310967
Alignment:
Q  7 tgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtc----tacatacccctttttatcaaacactcttcttacctcaacttg 102  Q
    |||||||||||||||| ||||||||||| ||||| | ||||||||  |||| ||    || |||||||||||||||||||||||||||||| ||||||||    
T  41311102 tgtttctttgatgacaaactttaagtatatcaacaggtgcaactccatctcatccacatatatacccctttttatcaaacactcttcttacttcaacttg 41311003  T
Q  103 tgcttcttccattactattgggttctttatcatctc 138  Q
    |||||||||||||||  |||||||||||| ||||||    
T  41311002 tgcttcttccattacctttgggttctttaccatctc 41310967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 7 - 212
Target Start/End: Complemental strand, 41324961 - 41324756
Alignment:
Q  7 tgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttttatcaaacactcttcttacctcaacttgtgct 106  Q
    |||||| ||||| ||| | ||||||||| |||| || |||||||||||||| || ||| |||||||  ||||||| ||||||||||||||| ||||||||    
T  41324961 tgtttccttgatcacagattttaagtatatcaattggtgcaactctgtctcatccacaaaccccttcctatcaaaaactcttcttacctcagcttgtgct 41324862  T
Q  107 tcttccattactattgggttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttcgctgccagcaatgaacaagtcctgcaaatgga 206  Q
    |||||||| ||  |||| ||||||| |||||| || |||||||||| |||| |   ||||||||||||| | ||||||  ||| | ||||| ||||||||    
T  41324861 tcttccatcacctttggattctttaccatctcagatatcgcccataacacagtcgttgacgatgtttcggtaccagcatcgaatatgtcctacaaatgga 41324762  T
Q  207 ataaca 212  Q
     |||||    
T  41324761 ttaaca 41324756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 5 - 174
Target Start/End: Original strand, 31188000 - 31188169
Alignment:
Q  5 aatgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttttatcaaacactcttcttacctcaacttgtg 104  Q
    ||||||||| |||| | | ||||||||||| |||| || ||||||||||| || || |||||||||||||||||||||||| ||||||| ||| ||||||    
T  31188000 aatgtttctctgattatagactttaagtatatcaattggtgcaactctgtttcatcgacatacccctttttatcaaacacttttcttacttcagcttgtg 31188099  T
Q  105 cttcttccattactattgggttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttc 174  Q
    |||  |||||||   |||||||||||| |||||| || ||| |||||||||||   || |||||||||||    
T  31188100 ctttctccattatctttgggttctttaccatctcagatatcccccatagcacagccccggacgatgtttc 31188169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 300 - 468
Target Start/End: Complemental strand, 41316503 - 41316335
Alignment:
Q  300 actaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttca 399  Q
    ||||||||| |||| |||||||||||| |||||||| || || ||||||||||||  |||||| ||||||| ||||||||||||||| ||||| ||||||    
T  41316503 actaacctggatgattgattttatattgtcatcagttaaaggatgttgtgagtgataattttcctgttgaatcttgagaagaacatctactagatcttca 41316404  T
Q  400 tccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctct 468  Q
    || ||||||  ||   ||||| || || | ||||| | |||||||||||||||| || |||||| ||||    
T  41316403 tcattgctttcttccttgtgaatgcttttgtgatcgtcgatgatgtcttgcaatgtcatatcaagctct 41316335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 7 - 152
Target Start/End: Complemental strand, 41432112 - 41431967
Alignment:
Q  7 tgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttttatcaaacactcttcttacctcaacttgtgct 106  Q
    |||||||||||||| | |||| |||||| |||| |  |||||||| ||||| || |||||||| ||  ||||||||||||||||||||||| ||||||||    
T  41432112 tgtttctttgatgatagacttcaagtatatcaattagtgcaactcagtctcatccacataccctttcatatcaaacactcttcttacctcagcttgtgct 41432013  T
Q  107 tcttccattactattgggttctttatcatctccgacatcgcccata 152  Q
    |||||||| ||  | ||||||||   |||||| |||||||||||||    
T  41432012 tcttccatcacattcgggttcttcgccatctcagacatcgcccata 41431967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 346 - 468
Target Start/End: Original strand, 31188434 - 31188556
Alignment:
Q  346 tgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgt 445  Q
    ||||||||| ||||||| ||||||| ||||||||||  ||||||||| |||||||||||||||  ||   ||||| ||||| ||||||||  |||||| |    
T  31188434 tgtgagtgatcattttcctgttgaatcttgagaagagtatcaactagatcttcatccttgctttcttccttgtgaatgtttttatgatcaacgatgatat 31188533  T
Q  446 cttgcaatatcctatcaatctct 468  Q
    ||||||||||| |||||||||||    
T  31188534 cttgcaatatcatatcaatctct 31188556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 300 - 469
Target Start/End: Complemental strand, 41332483 - 41332314
Alignment:
Q  300 actaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttca 399  Q
    ||||||||| |||| |||||| ||||| ||||| || || || |||| ||||| |  |||||| ||||||| ||||||||||||||| ||||| ||||||    
T  41332483 actaacctggatgattgatttcatattgtcatcggttaaaggatgttctgagtaataattttcctgttgaatcttgagaagaacatctactagatcttca 41332384  T
Q  400 tccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctc 469  Q
    || ||||||| ||   ||||| || |||| ||||| | |||||||||||||| |||| |||||| |||||    
T  41332383 tcgttgcttgcttccttgtgaatgcttctgtgatcgtcgatgatgtcttgcattatcatatcaagctctc 41332314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 300 - 408
Target Start/End: Complemental strand, 41286512 - 41286404
Alignment:
Q  300 actaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttca 399  Q
    ||||||||| ||||||| ||||| ||| |||||||||||||| |||| ||||||  || |||| ||||||| ||||||||||||||||| ||| ||||||    
T  41286512 actaacctggatgactgcttttaaattatcatcagtcaagggatgttatgagtgctcactttcctgttgaatcttgagaagaacatcaattagatcttca 41286413  T
Q  400 tccttgctt 408  Q
    || ||||||    
T  41286412 tctttgctt 41286404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 347 - 468
Target Start/End: Complemental strand, 31225378 - 31225257
Alignment:
Q  347 gtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtc 446  Q
    |||||||  ||||||| ||||| | ||||||||||  ||||||||| |||||||||||||||  ||   ||||| ||||| ||||||||| |||||| ||    
T  31225378 gtgagtgctcattttcctgttgtatcttgagaagagtatcaactagatcttcatccttgctttcttccttgtgaatgtttttatgatcatcgatgatatc 31225279  T
Q  447 ttgcaatatcctatcaatctct 468  Q
    |||||||||| |||||||||||    
T  31225278 ttgcaatatcatatcaatctct 31225257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 24 - 184
Target Start/End: Complemental strand, 31225759 - 31225599
Alignment:
Q  24 actttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttttatcaaacactcttcttacctcaacttgtgcttcttccattactattgg 123  Q
    ||||||||||| | || || ||||||||||| || || ||||  ||||||||||||||||   ||||||| ||| |||||||||| |||||||   ||||    
T  31225759 actttaagtatattaattggtgcaactctgtttcatcgacatgtccctttttatcaaacatgtttcttacttcagcttgtgcttcctccattatctttgg 31225660  T
Q  124 gttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttcgctgccagca 184  Q
    |||||||| |||||| || ||| |||||| |||||  ||||| || |||||||| ||||||    
T  31225659 gttctttaccatctcagatatcccccataacacaacccctgatgacgtttcgctaccagca 31225599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 300 - 468
Target Start/End: Complemental strand, 41328470 - 41328302
Alignment:
Q  300 actaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttca 399  Q
    ||||||||| |||| |||||| ||||| ||||| || || || |||| |||||||  |||||| ||||||| ||||||||||||||| ||||| ||||||    
T  41328470 actaacctggatgattgatttcatattgtcatcggttaaaggatgttctgagtgataattttcctgttgaatcttgagaagaacatctactagatcttca 41328371  T
Q  400 tccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctct 468  Q
    || ||||||| ||   ||||| |  |||| ||||| | ||||||||||||   |||| |||||||||||    
T  41328370 tcattgcttgcttccttgtgaatacttctgtgatcgtcgatgatgtcttgtgctatcatatcaatctct 41328302  T

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Target: chr5; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 300 - 469
Target Start/End: Complemental strand, 41366660 - 41366494
Alignment:
Q  300 actaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttca 399  Q
    ||||||||| ||||| ||||||||||| || || |||||||| |||||||||||   |||| || |||||| ||||||||||||||| ||||| || |||    
T  41366660 actaacctggatgaccgattttatattgtcgtcggtcaagggatgttgtgagtg---atttacacgttgaatcttgagaagaacatctactagatcatca 41366564  T
Q  400 tccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctc 469  Q
    | ||| || | |||  ||||| |  || | ||||||| |||||| |||||||||||| ||||| ||||||    
T  41366563 ttcttcctagctttcttgtgactacttttgtgatcatcgatgatctcttgcaatatcatatcagtctctc 41366494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 356 - 468
Target Start/End: Original strand, 31178399 - 31178511
Alignment:
Q  356 cattttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatat 455  Q
    ||||||| ||||||| ||||| |||  |||||||||| |||||||||||||||  ||   ||||| ||||| ||||||||| || ||| |||||||||||    
T  31178399 cattttcctgttgaatcttgataagtgcatcaactagatcttcatccttgctttcttccttgtgaatgtttttatgatcatcgacgatatcttgcaatat 31178498  T
Q  456 cctatcaatctct 468  Q
    | |||||||||||    
T  31178499 catatcaatctct 31178511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 300 - 468
Target Start/End: Complemental strand, 41324572 - 41324404
Alignment:
Q  300 actaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttca 399  Q
    ||||||||| |||| ||| |||||||| ||||| || || || ||||||||||||  |||||| ||||||| ||||||||||||||| ||||| | |||     
T  41324572 actaacctggatgattgactttatattgtcatcggttaaaggatgttgtgagtgataattttcctgttgaatcttgagaagaacatctactagatattct 41324473  T
Q  400 tccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctct 468  Q
    || |||||   ||   ||||| || || | ||||| | ||| ||||||||||||||| |||||||||||    
T  41324472 tcattgctatcttccttgtgaatgcttttgtgatcgtcgataatgtcttgcaatatcatatcaatctct 41324404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 62 - 159
Target Start/End: Complemental strand, 14235962 - 14235865
Alignment:
Q  62 acatacccctttttatcaaacactcttcttacctcaacttgtgcttcttccattactattgggttctttatcatctccgacatcgcccatagcacaat 159  Q
    |||||||||||| |||||||| | |||||||||||| |||||||||||||||| ||  | ||||||||||  ||||| |||||| || ||| ||||||    
T  14235962 acatacccctttctatcaaactcccttcttacctcagcttgtgcttcttccatcaccctagggttctttacaatctcagacatccccaataacacaat 14235865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 455
Target Start/End: Complemental strand, 41369918 - 41369839
Alignment:
Q  376 agaagaacatcaactaggtcttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatat 455  Q
    ||||||||||||||||||||||| |||||| ||  ||  || ||||||||| | |||||||||||||| |||||||||||    
T  41369918 agaagaacatcaactaggtcttcttccttgatttcttctctatgattgtttttgtgatcattgatgatatcttgcaatat 41369839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 468
Target Start/End: Complemental strand, 41310759 - 41310595
Alignment:
Q  304 acctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttcatcct 403  Q
    ||||| |||| |||||| ||||| ||||| || || || |||| |||||||  |||||| |||| || ||||||||||||||| ||||| |||||||| |    
T  41310759 acctggatgattgatttcatattgtcatccgttaaaggatgttctgagtgataattttcctgtttaatcttgagaagaacatctactagatcttcatcat 41310660  T
Q  404 tgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctct 468  Q
    ||||   ||   || || || || | ||||| | ||||||||||||||||||| ||| |||||||    
T  41310659 tgctatcttccttgcgaatgcttttgtgatcgtcgatgatgtcttgcaatatcatataaatctct 41310595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 417 - 462
Target Start/End: Complemental strand, 41431319 - 41431274
Alignment:
Q  417 gtgattgtttctatgatcattgatgatgtcttgcaatatcctatca 462  Q
    |||| ||||| ||||||||||||||||||||||||||||| |||||    
T  41431319 gtgactgtttttatgatcattgatgatgtcttgcaatatcgtatca 41431274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 7 - 202
Target Start/End: Original strand, 17248819 - 17249014
Alignment:
Q  7 tgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttttatcaaacactcttcttacctcaacttgtgct 106  Q
    |||||||||||||||| | ||||||||| | || || | |||||| || || ||||||||||||||| ||||||| || |||||||||||| ||||||||    
T  17248819 tgtttctttgatgacagaatttaagtatattaattgatccaactccgtttcatctacatacccctttctatcaaaaacacttcttacctcagcttgtgct 17248918  T
Q  107 tcttccattactattgggttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttcgctgccagcaatgaacaagtcctgcaaa 202  Q
     ||||||| ||  ||||||| ||||| ||||| |||||  |||||| |||||| || |||||||||||||| ||||||   |||| ||||||||||    
T  17248919 gcttccatcacctttgggttttttattatctcagacattccccataacacaatcccagacgatgtttcgctaccagcagcaaacatgtcctgcaaa 17249014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 300 - 464
Target Start/End: Original strand, 17249076 - 17249240
Alignment:
Q  300 actaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttca 399  Q
    ||||||||| |||| |||||||||||| ||||||||||| |  | ||||| || | || |||| ||||||| ||||| |||| |||||||||| ||||||    
T  17249076 actaacctggatgattgattttatattgtcatcagtcaatgaattttgtgggtaatcactttcttgttgaatcttgataagagcatcaactagatcttca 17249175  T
Q  400 tccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaat 464  Q
    ||||||| || |||  | ||    ||||| |||||||  ||||| |||||||||||| |||||||    
T  17249176 tccttgcgtgctttgttttgtccatttctgtgatcatctatgatatcttgcaatatcatatcaat 17249240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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