View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3753_low_3 (Length: 477)

Name: NF3753_low_3
Description: NF3753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3753_low_3
NF3753_low_3
[»] chr8 (11 HSPs)
chr8 (10-448)||(28723453-28723897)
chr8 (10-217)||(28731095-28731302)
chr8 (10-285)||(28708094-28708368)
chr8 (134-285)||(28715575-28715725)
chr8 (10-194)||(28628194-28628378)
chr8 (10-185)||(28623857-28624032)
chr8 (10-147)||(28695511-28695648)
chr8 (60-185)||(28736763-28736888)
chr8 (83-180)||(8846837-8846934)
chr8 (308-361)||(28708394-28708447)
chr8 (308-361)||(28715751-28715804)
[»] scaffold0591 (1 HSPs)
scaffold0591 (10-194)||(8249-8433)
[»] chr7 (2 HSPs)
chr7 (62-179)||(49106477-49106594)
chr7 (89-179)||(49098036-49098126)
[»] chr6 (1 HSPs)
chr6 (79-182)||(29648788-29648891)
[»] chr3 (1 HSPs)
chr3 (405-460)||(23238068-23238123)


Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 10 - 448
Target Start/End: Original strand, 28723453 - 28723897
Alignment:
Q  10 catcatcaaaacatctaattgggaggtagaccttgaagcataatcattatcaggtataataggaataaatgcctccataacaatcacctttccatcatta 109  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28723453 catcatcagaacatctaattgggaggtagaccttgaagcataatcattatcaggtataataggaataaatgcctccaaaacaatcacctttccatcatta 28723552  T
Q  110 ggaatagcgtcgtaacaattcttcaaaagctttaagcaattatcgtcgctccaatcatgtagtatccactataaaaattaatcaatatatataaactaat 209  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28723553 ggaatagcatcgtaacaattcttcaaaagctttaagcaattatcgtcgctccaatcatgtagtatccactataaaaattaatcaatatatataaactaat 28723652  T
Q  210 gttatttgatcatnnnnnnngttaacattgtattttacgcaccttataaaaatgcattacaaataattgatgatcaaagaacgtagag-nnnnnnnttaa 308  Q
    |||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||    
T  28723653 gttatttgatcataaaaaaagttaacattgtattttacgcaccttataaaaatgcattacaaataattgatgatcaaagaacgtagagaaaaaaaattaa 28723752  T
Q  309 aag----tcaacttgtatccttgttacactaatcaaaaactttttattggatacatatttaataaaacttaatgttggatag-aaattttgtatgacata 403  Q
    |||    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||    
T  28723753 aagtagatcaacttgtatccttattacactaatcaaaaactttttattggatacatatttaataaaacttaatcttggatagaaaattttgtatgatata 28723852  T
Q  404 cactccttccgtttctaaatatatatcgtagtcaatcactttaca 448  Q
    |||||||||||||||||| |||||||||||||||| |||||||||    
T  28723853 cactccttccgtttctaactatatatcgtagtcaaccactttaca 28723897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 10 - 217
Target Start/End: Original strand, 28731095 - 28731302
Alignment:
Q  10 catcatcaaaacatctaattgggaggtagaccttgaagcataatcattatcaggtataataggaataaatgcctccataacaatcacctttccatcatta 109  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28731095 catcatcagaacatctaattgggaggtagaccttgaagcataatcattatcaggtataataggaataaatgcctccaaaacaatcacctttccatcatta 28731194  T
Q  110 ggaatagcgtcgtaacaattcttcaaaagctttaagcaattatcgtcgctccaatcatgtagtatccactataaaaattaatcaatatatataaactaat 209  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28731195 ggaatagcatcgtaacaattcttcaaaagctttaagcaattatcgtcgctccaatcatgtagtatccactataaaaattaatcaatatatataaactaat 28731294  T
Q  210 gttatttg 217  Q
    ||||||||    
T  28731295 gttatttg 28731302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 10 - 285
Target Start/End: Original strand, 28708094 - 28708368
Alignment:
Q  10 catcatcaaaacatctaattgggaggtagaccttgaagcataatcattatcaggtataataggaataaatgcctccataacaatcacctttccatcatta 109  Q
    |||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||| ||||| |||||| ||||||||||||| |    
T  28708094 catcatcagaacatctaattgggaggtagacctcgaagcataaccattatcaggtataataggaagaaatgtctccaaaacaataacctttccatcatca 28708193  T
Q  110 ggaatagcgtcgtaacaattcttcaaaagctttaagcaattatcgtcgctccaatcatgtagtatccactataaaaattaatcaatatatataaactaat 209  Q
    | |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28708194 gtaatagcatcataacaattcttcaaaagctttaagcaattatcgtcgctccaatcatgtagtatccactataaaaattaatcaatatatataaactaat 28708293  T
Q  210 gttatttgatcatnnnnnnngttaacattgtattttacgcaccttataaaaatgcattacaaataattgatgatca 285  Q
    |||||||||||||       |||||||||||||||| || |||||||| ||||| |||||| ||||||||||||||    
T  28708294 gttatttgatcat-aaaaaagttaacattgtattttgcgtaccttatataaatgtattacagataattgatgatca 28708368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 134 - 285
Target Start/End: Original strand, 28715575 - 28715725
Alignment:
Q  134 aaaagctttaagcaattatcgtcgctccaatcatgtagtatccactataaaaattaatcaatatatataaactaatgttatttgatcatnnnnnnngtta 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||    
T  28715575 aaaagctttaagcaattatcgtcgctccaatcatgtagtatccactataaaaattaatcaatatatataaactaatgttatttgatcat-aaaaaagtta 28715673  T
Q  234 acattgtattttacgcaccttataaaaatgcattacaaataattgatgatca 285  Q
    |||||||||||| || |||||||| ||||| |||||| ||||||||||||||    
T  28715674 acattgtattttgcgtaccttatataaatgtattacagataattgatgatca 28715725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 10 - 194
Target Start/End: Original strand, 28628194 - 28628378
Alignment:
Q  10 catcatcaaaacatctaattgggaggtagaccttgaagcataatcattatcaggtataataggaataaatgcctccataacaatcacctttccatcatta 109  Q
    |||||||| |||||| ||||| ||||||||| |||||||||||  ||| ||||| | ||| ||||||  |||||| | ||||||||||||||||||||||    
T  28628194 catcatcagaacatccaattgagaggtagactttgaagcataaatattctcaggcacaatgggaatatgtgcctctaaaacaatcacctttccatcatta 28628293  T
Q  110 ggaatagcgtcgtaacaattcttcaaaagctttaagcaattatcgtcgctccaatcatgtagtatccactataaaaattaatcaa 194  Q
    || ||||| || |||||||||||||||| |||||||||||  || || ||||||||||| |||||||||||||||| ||||||||    
T  28628294 gggatagcatcataacaattcttcaaaatctttaagcaatgctcatcactccaatcatggagtatccactataaaatttaatcaa 28628378  T

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Target: chr8; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 10 - 185
Target Start/End: Original strand, 28623857 - 28624032
Alignment:
Q  10 catcatcaaaacatctaattgggaggtagaccttgaagcataatcattatcaggtataataggaataaatgcctccataacaatcacctttccatcatta 109  Q
    |||||||| ||||||||||||||   ||||| ||||||||||| |||| ||||| | ||| ||||||  |||||| | ||||||||||||||||||||||    
T  28623857 catcatcataacatctaattgggcaatagactttgaagcataaccattctcaggcacaatgggaatatgtgcctctaaaacaatcacctttccatcatta 28623956  T
Q  110 ggaatagcgtcgtaacaattcttcaaaagctttaagcaattatcgtcgctccaatcatgtagtatccactataaaa 185  Q
    || ||||| || ||||||||||||||||||||||||||||  || || ||||||||||| ||||||||||||||||    
T  28623957 gggatagcatcataacaattcttcaaaagctttaagcaatgctcatcactccaatcatggagtatccactataaaa 28624032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 10 - 147
Target Start/End: Original strand, 28695511 - 28695648
Alignment:
Q  10 catcatcaaaacatctaattgggaggtagaccttgaagcataatcattatcaggtataataggaataaatgcctccataacaatcacctttccatcatta 109  Q
    |||||||| |||||||||||| ||||||||| | |||||||||||||| ||| | | | | |||||   |||||| | |||||||||||| |||||||||    
T  28695511 catcatcagaacatctaattgagaggtagacttcgaagcataatcattctcatgcacagtgggaatttgtgcctctaaaacaatcaccttcccatcatta 28695610  T
Q  110 ggaatagcgtcgtaacaattcttcaaaagctttaagca 147  Q
    || ||||| || |||||||||||||||| |||||||||    
T  28695611 gggatagcatcataacaattcttcaaaatctttaagca 28695648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 60 - 185
Target Start/End: Original strand, 28736763 - 28736888
Alignment:
Q  60 caggtataataggaataaatgcctccataacaatcacctttccatcattaggaatagcgtcgtaacaattcttcaaaagctttaagcaattatcgtcgct 159  Q
    ||||||||||||||  || |||||| | || ||||||| |||| || | ||| | ||| || ||||| |||||||| |||||||||||||  ||||| ||    
T  28736763 caggtataataggacaaactgcctctaaaataatcacccttccctcgtcagggagagcatcataacagttcttcaacagctttaagcaatgctcgtcact 28736862  T
Q  160 ccaatcatgtagtatccactataaaa 185  Q
    ||||||||| ||||||||||||||||    
T  28736863 ccaatcatggagtatccactataaaa 28736888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 180
Target Start/End: Complemental strand, 8846934 - 8846837
Alignment:
Q  83 tccataacaatcacctttccatcattaggaatagcgtcgtaacaattcttcaaaagctttaagcaattatcgtcgctccaatcatgtagtatccacta 180  Q
    |||| ||||||||| |||||||||||||||||||| |  | |||||||||||| | ||| || || |  || || ||||| ||||| |||||||||||    
T  8846934 tccacaacaatcacttttccatcattaggaatagctttatgacaattcttcaataacttcaaacattgttcatcactccagtcatgaagtatccacta 8846837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 361
Target Start/End: Original strand, 28708394 - 28708447
Alignment:
Q  308 aaagtcaacttgtatccttgttacactaatcaaaaactttttattggatacata 361  Q
    ||||||||  ||||||||| ||||||||||| | ||||||||||| ||||||||    
T  28708394 aaagtcaaaatgtatccttattacactaatcgataactttttattagatacata 28708447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 361
Target Start/End: Original strand, 28715751 - 28715804
Alignment:
Q  308 aaagtcaacttgtatccttgttacactaatcaaaaactttttattggatacata 361  Q
    ||||||||  ||||||||| ||||||||||| | ||||||||||| ||||||||    
T  28715751 aaagtcaaaatgtatccttattacactaatcgataactttttattagatacata 28715804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0591 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 10 - 194
Target Start/End: Complemental strand, 8433 - 8249
Alignment:
Q  10 catcatcaaaacatctaattgggaggtagaccttgaagcataatcattatcaggtataataggaataaatgcctccataacaatcacctttccatcatta 109  Q
    |||||||| |||||| ||||| ||||||||| |||||||||||  ||| ||||| | ||| ||||||  |||||| | ||||||||||||||||||||||    
T  8433 catcatcagaacatccaattgagaggtagactttgaagcataactattctcaggcacaatgggaatatgtgcctctaaaacaatcacctttccatcatta 8334  T
Q  110 ggaatagcgtcgtaacaattcttcaaaagctttaagcaattatcgtcgctccaatcatgtagtatccactataaaaattaatcaa 194  Q
    || ||||| || |||||||||||||||| |||||||||||  || || ||||||||||| |||||||||||||||| ||||||||    
T  8333 gggatagcatcataacaattcttcaaaatctttaagcaatgctcatcactccaatcatggagtatccactataaaatttaatcaa 8249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 62 - 179
Target Start/End: Original strand, 49106477 - 49106594
Alignment:
Q  62 ggtataataggaataaatgcctccataacaatcacctttccatcattaggaatagcgtcgtaacaattcttcaaaagctttaagcaattatcgtcgctcc 161  Q
    |||||||| | || || |||||||| ||||||||||||||||||||  |||||||| || || || |||||||||||||| ||||| |  || || ||||    
T  49106477 ggtataatcgaaagaactgcctccaaaacaatcacctttccatcatcgggaatagcatcatagcagttcttcaaaagcttcaagcattgttcatcactcc 49106576  T
Q  162 aatcatgtagtatccact 179  Q
    ||||||| ||||||||||    
T  49106577 aatcatgaagtatccact 49106594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 179
Target Start/End: Original strand, 49098036 - 49098126
Alignment:
Q  89 acaatcacctttccatcattaggaatagcgtcgtaacaattcttcaaaagctttaagcaattatcgtcgctccaatcatgtagtatccact 179  Q
    ||||| ||||||||||| | ||||||||| | ||||||||| ||||| ||||| |||||||  || || |||||||| || ||||||||||    
T  49098036 acaataacctttccatcctcaggaatagctttgtaacaatttttcaacagcttcaagcaatgttcatcactccaatcgtgaagtatccact 49098126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 79 - 182
Target Start/End: Complemental strand, 29648891 - 29648788
Alignment:
Q  79 tgcctccataacaatcacctttccatcattaggaatagcgtcgtaacaattcttcaaaagctttaagcaattatcgtcgctccaatcatgtagtatccac 178  Q
    |||||||| ||| |||||||||||||||| ||||||||| || || |||||||||| ||| || | |||||| || |  ||||||||||| |||||||||    
T  29648891 tgcctccaaaactatcacctttccatcatcaggaatagcatcatagcaattcttcataagtttcatgcaattttcctgactccaatcatgaagtatccac 29648792  T
Q  179 tata 182  Q
    ||||    
T  29648791 tata 29648788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 460
Target Start/End: Original strand, 23238068 - 23238123
Alignment:
Q  405 actccttccgtttctaaatatatatcgtagtcaatcactttacacatgtcactact 460  Q
    |||||||||||||||||||| || | | ||| ||||||||||||||||||| ||||    
T  23238068 actccttccgtttctaaatacatgttgcagtaaatcactttacacatgtcaatact 23238123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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