View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3753_low_5 (Length: 307)
Name: NF3753_low_5
Description: NF3753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3753_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 20 - 296
Target Start/End: Complemental strand, 8724439 - 8724163
Alignment:
| Q |
20 |
aaagacaatgatggatctttccataaaacaaaaccgatttaagaaaccaatagaatatgtattggaaggtattacttcatctagtaaacaaccaagattt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8724439 |
aaagacaatgatggatctttccataaaacaaaactgatttaagaaaccaatagaatatatattggaaggtattacttcatctagtaaacaaccaagatta |
8724340 |
T |
|
| Q |
120 |
ccagtcatagataatagaataaagttagttacaccaaaataagctagttcaaagttagttataattggttacttgtgatccaagtcacctagctcttttc |
219 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8724339 |
ccagtcatagataatagaatagagttagttacaccaaaataagctagttcaaagttagttataattggttacttgtgatccaagtcacctagctcttttc |
8724240 |
T |
|
| Q |
220 |
acttatatatttatgaatcttgaaactaactttcagtttagatcattcattccaatatctgagatttctttgttcat |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8724239 |
acttatatatttatgaatcttgaaactaactttcagtttagatcattcattccaatatctgagatttctttgttcat |
8724163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 183
Target Start/End: Complemental strand, 22467542 - 22467501
Alignment:
| Q |
142 |
agttagttacaccaaaataagctagttcaaagttagttataa |
183 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22467542 |
agttagttacaccaaaataagcttgttcaaagttagttataa |
22467501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University