View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3754_low_1 (Length: 664)
Name: NF3754_low_1
Description: NF3754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3754_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 7e-97; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 1166882 - 1166621
Alignment:
| Q |
18 |
cagaaatatgtcatttgcgacatggacttccccacacaatcatcnnnnnnnnnnnnnnnnnnngatcagctcaatttgcaatctaatagacgaacgtgca |
117 |
Q |
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| T |
1166882 |
cagaaatatgtcatttgcgacatggacttccccacacaatcatcataaaataaaataaaaatagatcagctcaatttgcaatctaatagacgaacgtgca |
1166783 |
T |
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| Q |
118 |
ggtcgaatcagcaaaaaacataattcttaataaatttccaaaaaatagtggatcaagcaaaaggagaatgagttgacgaactaaacagcgtttctatggg |
217 |
Q |
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| T |
1166782 |
ggtcgaatcagcagaaaacataattcttaataaatttccaaaaaatagtggatcaagcaaaaggagaatgagttgacgaactaaacagcgtttctatggg |
1166683 |
T |
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| Q |
218 |
aatatcatagaacaca----ctaagcctcaacatacgaaacacccttcaagtttgtctatgg |
275 |
Q |
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| T |
1166682 |
aatatcatagaacacactaactaagcctcaacatacgaaatacccttcaagtttgtctatgg |
1166621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 329 - 517
Target Start/End: Complemental strand, 1166565 - 1166375
Alignment:
| Q |
329 |
ctaagaattttagaaattgaattgtgagaactccaatgatcatgaaattaacctttgctcagttgataatgatgagcatcag-aaactcttgctaaattt |
427 |
Q |
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| T |
1166565 |
ctaagaattttagaaattgaatcgtgagaactccaatgatcatgaaattaacctttgcccagttgataatgatgagcatcagaaaactcttgctaaattt |
1166466 |
T |
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| Q |
428 |
tctaagaatcaaataacttgttcttcgatccattaagca-tttgttattgttgacctgctctttatttgggttcttcacattgttgtacca |
517 |
Q |
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| T |
1166465 |
tctaagaatcaaataacttgttcttcgatccattaagcattttgttattgttgacctgctctttatttgggttcttcacattgttgtacca |
1166375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 568 - 647
Target Start/End: Complemental strand, 1166324 - 1166245
Alignment:
| Q |
568 |
cgaagtttgtcaagggatattgcatatacacatacttttgcctagacttagcaaattccttgtaactgataacttcatta |
647 |
Q |
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| T |
1166324 |
cgaagtttgtcaagggatattgcatatacacatacttttgcctagacttagcaaattccttgtaactgataacttcatta |
1166245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 7e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 329 - 517
Target Start/End: Complemental strand, 16848661 - 16848469
Alignment:
| Q |
329 |
ctaagaattttagaaattgaattgtgagaactccaatgatcatgaaattaacctttgctcagttgataatgatgagcat--cag-aaactcttgctaaat |
425 |
Q |
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| T |
16848661 |
ctaagaattttagaaattgaatcgtgagaactcgaatgatcatgaaattaacctttgcccaattgataatgatgagcattgcagaaaactcttactaaat |
16848562 |
T |
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| Q |
426 |
tttctaagaatcaaataacttgttcttcgatccattaagc-atttgttattgttgacctgctctttatttgggttcttcacattgttgtacca |
517 |
Q |
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| T |
16848561 |
tttccaagaatcaaataacttgttcttcgatacattaagcaatttgttatcattgacttgctttttatttggcttcttcacattgttgtacca |
16848469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 570 - 647
Target Start/End: Complemental strand, 16848416 - 16848339
Alignment:
| Q |
570 |
aagtttgtcaagggatattgcatatacacatacttttgcctagacttagcaaattccttgtaactgataacttcatta |
647 |
Q |
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| T |
16848416 |
aagtttgttaagggatattgcatatacacatacttttgcctagacttagcaaattccttataactgatgatttcatta |
16848339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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