View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3754_low_2 (Length: 319)
Name: NF3754_low_2
Description: NF3754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3754_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 11 - 305
Target Start/End: Original strand, 21438195 - 21438489
Alignment:
| Q |
11 |
atcatcatgacaatcttggcttacctccaaaaaaggtctacgaagaagaagctcagcaaatacacaagctgtagcccaaacatctacccctgacccatac |
110 |
Q |
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| T |
21438195 |
atcatcatgacaatcttggcttacctccaaaaaaggtctacgaagaagaagctcagcaaatacacaagctgtagcccaaacatctacccctgacccatac |
21438294 |
T |
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| Q |
111 |
ttcttggcaccaaataatagctcaggcgctctgtaccaccgagcaaatgcctatcaatgtatacaagtaaattgtaaatccattatgagaagttgaaaaa |
210 |
Q |
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| T |
21438295 |
ttcttggcaccaaataatagctcaggcgctctgtaccaccgagcaaatgcctatcaatgtatacaagtaaattgtaaatccattatgagaagttgaaaaa |
21438394 |
T |
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| Q |
211 |
tacaaacagataatatgaaacaagtagtgttcgatatgcacaagatatnnnnnnngacaagggttccaaacgaagcaggtttgtatgttgctact |
305 |
Q |
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| T |
21438395 |
tacaaacagataatatgaaacaagtagtgttcgatatggacaagatataaaaaaagacaagggttccaaacgaagcaggtatgtatgttgctact |
21438489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 164
Target Start/End: Complemental strand, 30366790 - 30366649
Alignment:
| Q |
23 |
atcttggcttacctccaaaaaaggtctacgaagaagaagctcagcaaatacacaagctgtagcccaaacatctacccctgacccatacttcttggcacca |
122 |
Q |
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||||||| |||||| ||||||||||| ||||||||||||||| ||||||| || |||| ||||||||||||||| |||| ||||||| ||||| |||| |
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| T |
30366790 |
atcttggtttacctgcaaaaaaggtcgacgaagaagaagctcggcaaatatgcaggctgcagcccaaacatctactcctgggccatactgcttggtacca |
30366691 |
T |
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| Q |
123 |
aataatagctcaggcgctctgtaccaccgagcaaatgcctat |
164 |
Q |
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| T |
30366690 |
aataacagctcaggtgctctataccaccgcgcaaatacctat |
30366649 |
T |
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