View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3755_high_13 (Length: 262)
Name: NF3755_high_13
Description: NF3755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3755_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 10 - 243
Target Start/End: Complemental strand, 33266018 - 33265786
Alignment:
| Q |
10 |
caatgatattccaacccatatacataagactagttatagttaacccccaaccatccaatgcagaaagnnnnnnnnnctaatttctatccaaacactctag |
109 |
Q |
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| T |
33266018 |
caatgatattccaacccatacacttaagactagttatagttaacccccaaccatccaatgcacaaa--aaaaaaaactaatttctagccaaacactctag |
33265921 |
T |
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| Q |
110 |
atgagtcacaccactctcaaagtacaaacaatacctaaccgtagacttagccaattaccattctcacaaagacac-ttaatatgatctaataacaataca |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
33265920 |
atgagtcacaccactctcaaagtacaaacaatacctaaccgtagacttaaccaattaccattctcacaaagacactttaatataatctaataacaataca |
33265821 |
T |
|
| Q |
209 |
actactgttattaaaaatatcccaatttgggtcct |
243 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
33265820 |
actactgttattaaaaatatcccaatttgggtcct |
33265786 |
T |
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