View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3755_high_3 (Length: 548)
Name: NF3755_high_3
Description: NF3755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3755_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 18 - 535
Target Start/End: Original strand, 10594606 - 10595121
Alignment:
| Q |
18 |
cgaagcatctcgaacacaaagattttttagtcataactttgtttttgaaacatgtacataaggaacatgttttcaaacaaatttaattcaacataaacat |
117 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10594606 |
cgaagcatctcgaacacaaagatttt-tagtcataactttgtttttgaaacatgtatataaggaacatgttttcaaacaaatttcattcaacataaacat |
10594704 |
T |
|
| Q |
118 |
aaagttaaacgacaaagcctacaactaaagcacacaagtacacttttattttatctcttcttgggttggtggtttgattttgcatcgataaattttcttt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10594705 |
aaagttaaacgacaaagcctacaactaaagcacacaactacacttttatttaatctcttcttgggttggtggtttgattttgcatcgataaattttcttt |
10594804 |
T |
|
| Q |
218 |
tggattgtgtggaaggacctttggctggatttttgtgtacctgttttgttaatgtaagtcatgcttttccttggctatgttatatcgtgtatagtataga |
317 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10594805 |
tggattgtgtggtaggatctttggctggatttttgtgtacctgttttgttaatgtaagtcatgcttttccttggctatgttatatcgtgtatagtataga |
10594904 |
T |
|
| Q |
318 |
taataaaatataggaaaggtttgtgtatgttaaattccctgtataatagcagtacaactttgtgaaccaggaatgtgttgaattttgtaaattttgatgt |
417 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10594905 |
taatagaatataggaaaggtttttgtatgttaaattccctgtataatagcagtacaactttgtgaaccaggaatgtgttgaattttg-aaattttgatgt |
10595003 |
T |
|
| Q |
418 |
agtataatagtgagaagctctagagaaattaccaaattgttttgcctatgtaataaaaaagatcctcagatgtgtttgcttcatattgtttgaattggag |
517 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10595004 |
agtataatagtgagaagctctagagatattaccaaattgttttgcctatgtaataaaaaagatcctcagatgtgtttgcttcatattgtttgaattggag |
10595103 |
T |
|
| Q |
518 |
gaaatgatgtgcttgatg |
535 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
10595104 |
gaaatgatgtgcttgatg |
10595121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University