View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3755_high_5 (Length: 485)
Name: NF3755_high_5
Description: NF3755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3755_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 14 - 468
Target Start/End: Original strand, 1537150 - 1537602
Alignment:
| Q |
14 |
agatatatactttaaatatttggattaattggttttagtatttcgttgtaatttgtctgatcaatctttgtgtttttgatgaatgtgcttgtttgttact |
113 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1537150 |
agatatatactttagatatttggattaattggttttagtatttggttgtaatttgtctgatcaatctttgtgtttttgatgaatgtgcttgtttgttact |
1537249 |
T |
|
| Q |
114 |
cctcattcgattaaacgtgtaacgtgttatctggttttgtttattatgttaatgtattatctgcaatagttttgattgtgaacatgtaaagttagaaaac |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1537250 |
cctcattcgattaaacgtgtaacgtgttatctggttttgtttattatgttaatgtattatctgcaatagttttgattgtgaacatgtaaagttaaaaaac |
1537349 |
T |
|
| Q |
214 |
aaagtatcaattcctcagggatagttagatagatactaatagttatgtaatatctaaattggttgagtaacactatatattacttttatgcttaggatca |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1537350 |
aaagtatcaattcctcagggatagttagatagatactaatagttatgta--atctaaattggttgaataacactatatattacttttatgcttaggatca |
1537447 |
T |
|
| Q |
314 |
agtttgaagtatgcttcttgatgatgttattatccaatctacattttttctataacatttcttcttaagccttgatatgagttatagttatcaggttttg |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1537448 |
agtttgaagtatgcttcttgatgatgttattatccaatctacattttttctataacatttcttcttaagccttgatatgagttatagttatcaggttttg |
1537547 |
T |
|
| Q |
414 |
atttccgatatttccttgtcagatggcgtcttctggtattttcataggtcctaaa |
468 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1537548 |
atttccgatatttccttgtcagatggcgtcttctggtattttcataggtcctaaa |
1537602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 384
Target Start/End: Complemental strand, 46644316 - 46644247
Alignment:
| Q |
311 |
tcaagtttgaagtatgcttcttgatgatgttattatccaatctacattttttctataacatttcttcttaagcc |
384 |
Q |
| |
|
||||| |||||||||| |||||||||||||||| | ||||||||||| | ||||||||||||||||||||| |
|
|
| T |
46644316 |
tcaagcttgaagtatg-ttcttgatgatgttat---ctaatctacatttcctttataacatttcttcttaagcc |
46644247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 46616702 - 46616734
Alignment:
| Q |
205 |
ttagaaaacaaagtatcaattcctcagggatag |
237 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
46616702 |
ttagaaaacaaagtatcaattccttagggatag |
46616734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University