View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3755_low_1 (Length: 662)
Name: NF3755_low_1
Description: NF3755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3755_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 568; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 18 - 620
Target Start/End: Complemental strand, 44649428 - 44648822
Alignment:
| Q |
18 |
agagacattggaaatgggtgatatcactgatatgatatatattcacgtgacacatatagcagca-----tgcatggtaagtcccaaggaggaattgtttc |
112 |
Q |
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| T |
44649428 |
agagacattggaaatgggtgatatcactgatatgatatatattcacgtgacacatatagcagcaatgcatgcatggtaagtcccaaggaggaattgtttc |
44649329 |
T |
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| Q |
113 |
atgttttctcttatggtgatttaagacattggttggttggtttggttttgacagtgaaaacacaagcagcagtttcacatgcatgccatgccacctctgc |
212 |
Q |
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| T |
44649328 |
atgttttctcttatggtgatttaagacattggttggttggtttggttttgacagtgaaaacacaagcagcagtttcacatgcatgccatgccacctctgc |
44649229 |
T |
|
| Q |
213 |
ttaatctcatcgatatttgctcaaaagaccctaattgctcacagccccctccaaaatccagaaattaagctacgatcactattttttgggacttaggaag |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44649228 |
ttaatctcatcgatatttgctcaaaagaccctaattgctcacagccccctccaaaatccagaaattaagctacgatcactattttttgggacttaggaag |
44649129 |
T |
|
| Q |
313 |
ggatccttggtcctggattgggggacataccaagggaacataagggacatgtgatacattgcatccaaacacaacacattcaacactcaaattcattcaa |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44649128 |
ggatccttggtcctggattgggggacataccaagggaacataagggacatgtgatacattgcattcaaacacaacacattcaacactcaaattcattcaa |
44649029 |
T |
|
| Q |
413 |
cattcaaataacataaaatttgtaagcaatttaaggggcttttgagcaactttcatctcatctcatgtcctcctaaataattttgtggtaaaatatttgg |
512 |
Q |
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| T |
44649028 |
cattcaaat-acataaaatttgtaagcaatttaaggggctttttagcaactttcatctcatctcatgtcctcctaaataattttgtgctaaaatatttgg |
44648930 |
T |
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| Q |
513 |
aatgtacattttcagaaaaattataaataataatttgtttgtcttcaaggtgtgtatttctgaaattaattatgcgattttataggaatatggagggtag |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44648929 |
aatgtacattttcagaaaaattataaataataatttgtttgtcttcaaggtgtgtatttctgaaattaattatgcgattttataggaatatggagggtag |
44648830 |
T |
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| Q |
613 |
ataaagta |
620 |
Q |
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|||||||| |
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| T |
44648829 |
ataaagta |
44648822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 420
Target Start/End: Complemental strand, 33229714 - 33229675
Alignment:
| Q |
382 |
cacaacacattcaacactc-aaattcattcaacattcaaa |
420 |
Q |
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| T |
33229714 |
cacaacacattcaacactcaaaattcattcaacattcaaa |
33229675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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