View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3755_low_10 (Length: 376)
Name: NF3755_low_10
Description: NF3755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3755_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 33266046 - 33266323
Alignment:
| Q |
1 |
tattttgatgtttaaacaaaaagttatataagtaatttatcagtacttttgcttggaattggaacccactcaggtgttgttggtgatcacagatgacaca |
100 |
Q |
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| T |
33266046 |
tattttgatgtttaaacaaaaagttatataagtaatttatcagtacttttgcttggaattggaacccactcaggtgttgttggtgatcacaaatgacaca |
33266145 |
T |
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| Q |
101 |
ctttgtgggagggaacattaaaatgaaatgtcatctttttggttggtgtaatttcttgttctaaatgtgttaaacatggtcattaagttgttgtgaatga |
200 |
Q |
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| T |
33266146 |
ctttgtgggagggaacattaaaatgaaatgtcatctttttggttggtgtaatttcttgttctaaatgtgttaaacagggtcattaagttgttgtgaatga |
33266245 |
T |
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| Q |
201 |
tgatagttatgtatgtaagtttttcatagttttatattctattgagacatgcaaatcccacttttttcttttgatatt |
278 |
Q |
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| T |
33266246 |
tgatagttatgtatgtaagtttttcatagttttatattctattgagacatgcaaatcccacttttttcttttgatatt |
33266323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 289 - 356
Target Start/End: Original strand, 33266363 - 33266430
Alignment:
| Q |
289 |
cgtacaattcaatcgcaggcatacagtgacatttcatgaaagaaaatacaagagttttttattccact |
356 |
Q |
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| T |
33266363 |
cgtacaattcaatcgtagacatactgtgacatttcatgaaagaaaatacaagagttttttattccact |
33266430 |
T |
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