View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3755_low_11 (Length: 315)
Name: NF3755_low_11
Description: NF3755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3755_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 11 - 298
Target Start/End: Original strand, 36722899 - 36723186
Alignment:
| Q |
11 |
cacagagcaaagtatgataattctgaatgaaaaagaaaatcatcatattttcaataaatatctatcttttggttccgagatttaacctttacacatagca |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36722899 |
cacaaagcaaagtatgataattctgaatgaaaaagaaaatcatcatattttcaataaatatctatcttttggttccgagatttaacctttacacatagca |
36722998 |
T |
|
| Q |
111 |
ctaaaatcatcacaattggtatgccattcaactataggaaaaaacgtacataaaatacatatacccaaacatagatcgtctatgaatgcttgataacgtg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36722999 |
ctaaaatcatcacaattggtatgccattcaactataggaaaaaacgtacttaaaatacagatacccaaacatagatcgtctatgaatgcttcataacgtg |
36723098 |
T |
|
| Q |
211 |
atgaataccactggcatcaatttgagaagaagtaactcttcttaacttctaccacagaaccttccacaatctaagaatgagcaaatgc |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36723099 |
atgaataccactggcatcaatttgagaagaagtaactcttcttaacttctaccacagaaccttccacaatctaagaatgagcaaatgc |
36723186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University