View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3755_low_12 (Length: 313)
Name: NF3755_low_12
Description: NF3755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3755_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 1537172 - 1536879
Alignment:
| Q |
1 |
ccaaatatttaaagtatatatctttgttcctatacatctatgttatcacacagttatgacagaagcacgttgagcaaagttaaggattcttggtaacctt |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1537172 |
ccaaatatctaaagtatatatctttgttcctatacatctatgttatcacacagttatgacagaagcacgttgagcaaagttaagggttcttggtaacctt |
1537073 |
T |
|
| Q |
101 |
tgaaggagaaatcaagtccttgtgttgagtggnnnnnnnnatttnnnnnnngcaagtccttatgctaagtggnnnnnnngaaacttcaaagagggttttg |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1537072 |
tgaaggagaaatcaagtccttgtgttgagtggttttttttatttaaaaaaagcaagtccttatgctaagtggttttcttgaaacttcaaagagggttttg |
1536973 |
T |
|
| Q |
201 |
tgaaggaataaatttatgtactataaatcgacaaaggtggactcaattggtaagtagttgattcacttgcaaggtcgactctcccacaagatca |
294 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1536972 |
tgaaggaataaatttatgtactataagtcgacgaaggtggactcaattggtaagtagttaattcacttgcaaggtcgactctcccacaagatca |
1536879 |
T |
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