View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3755_low_15 (Length: 265)
Name: NF3755_low_15
Description: NF3755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3755_low_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 955634 - 955881
Alignment:
| Q |
1 |
aacatggctcctcaactcaatgacattgaaaccccgtcattagacgagttctttgatggtgtgattcacaacaacattagaccggggccgcctccagcgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
955634 |
aacatggctcctcaactcaatgacattgaaaccccgtcattagacgagttctttgatggtgtgattcacaacaacattagaccggggccgcctccagcgt |
955733 |
T |
|
| Q |
101 |
caccttcggccattgaagccttgccaatggttaaggtaacagaaacacatttagcaagtgatccgaattgtccaatatgcaaagatgagtttgaggttga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
955734 |
caccttcggccattgaagccttgccaatggttaaggtaacagaaacacatttagcaagtgatccgaattgtccaatatgcaaagatgagtttgaggttga |
955833 |
T |
|
| Q |
201 |
tgtggaagtgagagagttaccatgcaaacatttctaccattctgactg |
248 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
955834 |
tgtgcaagtgagagagttaccatgcaaacatttctaccattctgactg |
955881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University