View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3755_low_17 (Length: 253)
Name: NF3755_low_17
Description: NF3755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3755_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 13 - 142
Target Start/End: Complemental strand, 13324346 - 13324217
Alignment:
| Q |
13 |
aatatgagatgttcaatccaaccatccacttgcgggattctatttaagcaatttctaaacaacctcaatcaattttacttcaatggtgattaacaataag |
112 |
Q |
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| T |
13324346 |
aatatgagatgttcaatccaaccatccacttgcgggattctatttaagcaatttctaaacaacctcaatcaattttacttcaacggtgattaacaataag |
13324247 |
T |
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| Q |
113 |
caactctatacttgattccacaaatttgta |
142 |
Q |
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| T |
13324246 |
caactctatacttgatcccacaaatttgta |
13324217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 13 - 142
Target Start/End: Original strand, 48093773 - 48093901
Alignment:
| Q |
13 |
aatatgagatgttcaatccaaccatccacttgcgggattctatttaagcaatttctaaacaacctcaatcaattttacttcaatggtgattaacaataag |
112 |
Q |
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| T |
48093773 |
aatatgaggtgttca-tccaaccgtccacttgcaagatcctatttaagcaatttctaaacaacctcaatcaattttacttcaatggtgattaacaataag |
48093871 |
T |
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| Q |
113 |
caactctatacttgattccacaaatttgta |
142 |
Q |
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| T |
48093872 |
aaactctatacttgatcccacaaatttgta |
48093901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 13 - 142
Target Start/End: Complemental strand, 5666219 - 5666090
Alignment:
| Q |
13 |
aatatgagatgttcaatccaaccatccacttgcgggattctatttaagcaatttctaaacaacctcaatcaattttacttcaatggtgattaacaataag |
112 |
Q |
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| T |
5666219 |
aatatgagatgttcaatccaaccatccacttgcgggattctatttaagcaatttctaaacaacctcaatcaattttacttcaacggtgattaacaataag |
5666120 |
T |
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| Q |
113 |
caactctatacttgattccacaaatttgta |
142 |
Q |
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| T |
5666119 |
caactctatacttgatcccacaaatttgta |
5666090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 142
Target Start/End: Complemental strand, 51309205 - 51309139
Alignment:
| Q |
76 |
ctcaatcaattttacttcaatggtgattaacaataagcaactctatacttgattccacaaatttgta |
142 |
Q |
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| T |
51309205 |
ctcaatcaattttactccaatggtgattaacaataagcaaccctatcattgaccccacaaatttgta |
51309139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 57 - 142
Target Start/End: Original strand, 31782383 - 31782468
Alignment:
| Q |
57 |
taagcaatttctaaacaacctcaatcaattttacttcaatggtgattaacaataagcaactctatacttgattccacaaatttgta |
142 |
Q |
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| T |
31782383 |
taagcaacttataagcaatctcaatcaattttactctaatggtgattaacaataagcaaccttatgcttgaccccacaaatttgta |
31782468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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