View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3755_low_18 (Length: 249)
Name: NF3755_low_18
Description: NF3755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3755_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 16295180 - 16294944
Alignment:
| Q |
1 |
tgtcattgaaactttccttctacaaagtggacaatttgcattgttttgaagccaaatatcaacacaatcaatgtgaaataaatggttgcaatttggtata |
100 |
Q |
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| T |
16295180 |
tgtcattgaaactttccttctacaaagtggacaatttgcattgttttgaagccaaatatcaacacaatcaatgtgaaataaatggttgcaatttggtata |
16295081 |
T |
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| Q |
101 |
actcttagtttctcatcttcttgaaactcactcaaacaaaaagcacattcactagagattcctaattcaccataatctttctctagtttgtaatgaatca |
200 |
Q |
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| T |
16295080 |
actcttagtttctcatcttcttgaaactcactcaaacaaaaagcacattcactagagattcctaattcaccataatctttctctagtttgtaatgaatca |
16294981 |
T |
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| Q |
201 |
ccggaattgaattaatcaccgattgttctaatcctct |
237 |
Q |
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| T |
16294980 |
ccggaattgaattaatcaccgattgttctaatcctct |
16294944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 32965243 - 32965377
Alignment:
| Q |
18 |
ttctacaaagtggacaatttgcattgttttgaagccaaatatcaacacaatcaatgtgaaataaatggttgcaatttggtataactcttagtttctcatc |
117 |
Q |
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| T |
32965243 |
ttctacaaagtggacaattagcattgttttgtaaccaaacatcaatgcaatcaatgtgaaaaacatggctacaatttggtataatcctaagtttttcatc |
32965342 |
T |
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| Q |
118 |
ttcttgaaactcactcaaacaaaaagcacattcac |
152 |
Q |
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| T |
32965343 |
ttgttgaaactcattcaaacaaacagcacattcac |
32965377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 30811571 - 30811494
Alignment:
| Q |
19 |
tctacaaagtggacaatttgcattgttttgaagccaaatatcaacacaatcaatgtgaaataaatggttgcaatttgg |
96 |
Q |
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||||||||| |||||||| | ||| |||||||||||||||||| ||||| | |||||| ||||||||||||||| |
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| T |
30811571 |
tctacaaagaggacaattagaatttgtttgaagccaaatatcaatgcaatccaagtgaaaagcatggttgcaatttgg |
30811494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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