View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3755_low_9 (Length: 386)
Name: NF3755_low_9
Description: NF3755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3755_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 38055378 - 38055012
Alignment:
| Q |
1 |
tttaaaagaaaatttttattaatgaattttctaacttatatctttatgacactcgttagtaagacactccccttaattattaatatcacaatccacaagg |
100 |
Q |
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| T |
38055378 |
tttaaaagaaagtttttattaatgaattttctaacctatatttttatgacactcgttagtaagacactccccttaattattaatatcacaatacacaagg |
38055279 |
T |
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| Q |
101 |
agagtttacattttttaatgataagtttaatatgagcatgttgacaagttttaactcaactatctttcaacnnnnnnncgttttaactcaactaacaaat |
200 |
Q |
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| T |
38055278 |
agagtttacattttttaatgataagtttaatatgagcatgttgacaagttttaactcaactatctttcaacaaaaaaacgttttaactcaactaacaaat |
38055179 |
T |
|
| Q |
201 |
gtacacatgaaaaacaaacatattagtaatacttannnnnnncacgttatttttcaagaaatgagtcacttaatgcatgggataaatagtttgtcactaa |
300 |
Q |
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| T |
38055178 |
gtacacatgaaaaactaacatattagtaatacttatttttttcacgttatttttcaagagatgagtcacttaatacatgggataaatagtttgtcactaa |
38055079 |
T |
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| Q |
301 |
ttaattagtaaagtttacaccacnnnnnnnnnnnnnntcaatcaattaagtttaatattttgtatatcttt |
371 |
Q |
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| T |
38055078 |
ttaattagtaaagtttacaccac----aaaaaaaaaatcaatcaattaagtttaatattttgtatatcttt |
38055012 |
T |
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