View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3756_high_11 (Length: 337)
Name: NF3756_high_11
Description: NF3756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3756_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 90 - 309
Target Start/End: Original strand, 13446681 - 13446904
Alignment:
| Q |
90 |
ctgtgtcaataatgccattcaaagtactcgttgcagcctataaaacgttgtacaatattagtttcttgatta----acattatcaatttctgaaataata |
185 |
Q |
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| T |
13446681 |
ctgtgtcaataatgccattcaaagtactcgttgcagcctataaaatgttgtacattattagtttcttgattaattaacattatcaatttctgaaataatg |
13446780 |
T |
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| Q |
186 |
aaaattcagaaattaatcaaatgaatcatatacctgcatctgttctggatcgcggcttactagaaacgagtctgctcctaagtgttctattgcttccttt |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13446781 |
aaaattcagaaattaatcaaatgaatcatatacctgcatctgttctggatcgcggcttactagaaacgagtctgctcctaagtgttctattgcttccttt |
13446880 |
T |
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| Q |
286 |
tcctttttaggcgacgtactaatt |
309 |
Q |
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|||||||||||||||||||||||| |
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| T |
13446881 |
tcctttttaggcgacgtactaatt |
13446904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 92 - 309
Target Start/End: Original strand, 13426027 - 13426244
Alignment:
| Q |
92 |
gtgtcaataatgccattcaaagtactcgttgcagcctat-aaaacgttgtacaatattagtttcttgattaacattatcaatttctgaaataataaaaat |
190 |
Q |
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| T |
13426027 |
gtgtcgataataccattcaaagtacccattgcagcctattaaaacgttgtacaatattagtttcttgattaacattctcgatttctgaaataatgaaa-t |
13426125 |
T |
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| Q |
191 |
tcagaaattaatcaaatgaatcatatacctgcatctgttctggatcgcggcttactagaaacgagtctgctcctaagtgttctattgcttccttttcctt |
290 |
Q |
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| T |
13426126 |
tcgcaaatcaatcaaatgaatcatatacctgcatctgatctggatcgcggcttactagaaacgagtcagctcctaaatgttctatcgcttccttttcttt |
13426225 |
T |
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| Q |
291 |
tttaggcgacgtactaatt |
309 |
Q |
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| T |
13426226 |
gctaggcgatgtactaatt |
13426244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 90 - 309
Target Start/End: Original strand, 13419135 - 13419353
Alignment:
| Q |
90 |
ctgtgtcaataatgccattcaaagtactcgttgcagcctataaaacgttgtacaatattagtttcttgattaacattatcaatttctgaaataataaaaa |
189 |
Q |
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||||||||||||| ||||||||||||| | |||||| |||| ||| |||||||||||||||||| ||||||| |||| |||||||| ||||| | || |
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| T |
13419135 |
ctgtgtcaataataccattcaaagtacccattgcagtctatgaaatgttgtacaatattagtttattgattaccattgccaatttctaaaatattttaa- |
13419233 |
T |
|
| Q |
190 |
ttcagaaattaatcaaatgaatcatatacctgcatctgttctggatcgcggcttactagaaacgagtctgctcctaagtgttctattgcttccttttcct |
289 |
Q |
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| T |
13419234 |
ttcacaaatgaatcaaatgaatcatatacctgcatctgatcaggatcgcggcttactagaaacgagtcagctcccaagtgttctattgcttccttttctt |
13419333 |
T |
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| Q |
290 |
ttttaggcgacgtactaatt |
309 |
Q |
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| | |||||| ||||||||| |
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| T |
13419334 |
tgtgaggcgatgtactaatt |
13419353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 216 - 309
Target Start/End: Original strand, 13453764 - 13453857
Alignment:
| Q |
216 |
tacctgcatctgttctggatcgcggcttactagaaacgagtctgctcctaagtgttctattgcttccttttcctttttaggcgacgtactaatt |
309 |
Q |
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| T |
13453764 |
taccttcatctgctttggatcacggcttattagaaatgagtccgctcgtaagtgttctaatgcttccttttcctttttaggtgatgtactaatt |
13453857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 309
Target Start/End: Original strand, 13412958 - 13413008
Alignment:
| Q |
259 |
gctcctaagtgttctattgcttccttttcctttttaggcgacgtactaatt |
309 |
Q |
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| T |
13412958 |
gctcctaagtgttctattgcttccttttctttgttaggcgatgtactaatt |
13413008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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