View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3756_high_12 (Length: 334)
Name: NF3756_high_12
Description: NF3756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3756_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 39586507 - 39586830
Alignment:
| Q |
1 |
attagtcccaagaaatgttcttccgtgtccgcaacctccacaaactcatgaacttgctctgtcacccaacataacgacttttcaacaagttcttctatta |
100 |
Q |
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| T |
39586507 |
attagtcccaagaaatgttcttccgtgtccgcaacctccacaaactcatgaacttgctctgtcacccaacataacgacttttcaacaagttcttctatta |
39586606 |
T |
|
| Q |
101 |
atctacaactatagggagttgaaagcacattcccaaaatacgaactcataaactcttctttgtttttgtcaccgttgcttaatctctttcttccgtcaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39586607 |
atctacaactatagggagttgaaagcacattcccaaaatacgaactcataaactcttctttgtttttgtcaccgttgcttaatctctttcttccgtcaac |
39586706 |
T |
|
| Q |
201 |
cacaatccccatttttgcaacaacattttcactattggttgaagcggctgatgcaaccattttccacaggaaagcagaaaacgattcaagttttgagcgc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39586707 |
cacaatccccatttttgcaacaacattttcactattggttgaagcggctgatgcaaccattttccacaagaaagcagaaaacgattcaagttttgagcgc |
39586806 |
T |
|
| Q |
301 |
ttaacgcttccactattatctgtg |
324 |
Q |
| |
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||||||||||||||||||| |||| |
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| T |
39586807 |
ttaacgcttccactattatttgtg |
39586830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 35 - 302
Target Start/End: Original strand, 39553434 - 39553701
Alignment:
| Q |
35 |
cctccacaaactcatgaacttgctctgtcacccaacataacgacttttcaacaagttcttctattaatctacaactatagggagttgaaagcacattccc |
134 |
Q |
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|||||| ||||||||||||| | || | ||||||||||| || || ||||| || |||||| |||||||| || ||||||| | |||||||||||||| |
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| T |
39553434 |
cctccaaaaactcatgaactcgatcagccacccaacatagcggattatcaaccagctcttctgctaatctaccaccatagggaatcgaaagcacattccc |
39553533 |
T |
|
| Q |
135 |
aaaatacgaactcataaactcttctttgtttttgtcaccgttgcttaatctctttcttccgtcaaccacaatccccatttttgcaacaacattttcacta |
234 |
Q |
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|||||| ||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||| || |
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| T |
39553534 |
aaaatatgaattcataagctcttctttgtttttgtcaccgttgcttagcctctttcttccgtcaaccacaagccccatttttgcaacaatattttcatta |
39553633 |
T |
|
| Q |
235 |
ttggttgaagcggctgatgcaaccattttccacaggaaagcagaaaacgattcaagttttgagcgctt |
302 |
Q |
| |
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||| ||||||| ||| |||||||||||||||| |||||||||||| || || |||||||||||||| |
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| T |
39553634 |
ttgattgaagccgcttcggcaaccattttccacaagaaagcagaaaaggactcgagttttgagcgctt |
39553701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 35 - 299
Target Start/End: Original strand, 39543415 - 39543679
Alignment:
| Q |
35 |
cctccacaaactcatgaacttgctctgtcacccaacataacgacttttcaacaagttcttctattaatctacaactatagggagttgaaagcacattccc |
134 |
Q |
| |
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|||||| ||||||||||||| | || | ||||||||||| || || ||||| || |||||| |||||||| || ||||||| | |||||||||||||| |
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| T |
39543415 |
cctccaaaaactcatgaactcgatcagccacccaacatagcggattatcaaccagctcttctgctaatctaccaccatagggaatcgaaagcacattccc |
39543514 |
T |
|
| Q |
135 |
aaaatacgaactcataaactcttctttgtttttgtcaccgttgcttaatctctttcttccgtcaaccacaatccccatttttgcaacaacattttcacta |
234 |
Q |
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|||||| ||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||| || |
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| T |
39543515 |
aaaatatgaattcataagctcttctttgtttttgtcaccgttgcttagcctctttcttccgtcaaccacaagccccatttttgcaacaatattttcatta |
39543614 |
T |
|
| Q |
235 |
ttggttgaagcggctgatgcaaccattttccacaggaaagcagaaaacgattcaagttttgagcg |
299 |
Q |
| |
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||| ||||||| ||| |||||||||||||||| |||||||||||| || || ||||||||||| |
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| T |
39543615 |
ttgattgaagccgcttcggcaaccattttccacaagaaagcagaaaaggactcgagttttgagcg |
39543679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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