View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3756_high_13 (Length: 330)

Name: NF3756_high_13
Description: NF3756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3756_high_13
NF3756_high_13
[»] chr8 (5 HSPs)
chr8 (1-320)||(10682693-10683012)
chr8 (150-320)||(200452-200622)
chr8 (150-320)||(315289-315459)
chr8 (150-320)||(30408571-30408741)
chr8 (150-320)||(43810251-43810421)
[»] chr5 (8 HSPs)
chr5 (16-224)||(30049134-30049343)
chr5 (150-320)||(16795888-16796058)
chr5 (150-320)||(40370015-40370185)
chr5 (150-320)||(12020508-12020678)
chr5 (150-320)||(30697015-30697185)
chr5 (150-320)||(7102142-7102312)
chr5 (150-320)||(37679255-37679425)
chr5 (238-320)||(10276243-10276325)
[»] chr2 (4 HSPs)
chr2 (150-320)||(36672270-36672440)
chr2 (150-320)||(8052611-8052781)
chr2 (238-320)||(13269387-13269469)
chr2 (150-320)||(35953200-35953370)
[»] scaffold0044 (1 HSPs)
scaffold0044 (150-320)||(47633-47803)
[»] chr7 (2 HSPs)
chr7 (150-320)||(7942851-7943021)
chr7 (150-320)||(27758616-27758786)
[»] chr6 (3 HSPs)
chr6 (150-320)||(8318272-8318442)
chr6 (142-320)||(17889388-17889568)
chr6 (275-320)||(17161314-17161359)
[»] chr4 (3 HSPs)
chr4 (150-320)||(44148777-44148947)
chr4 (56-320)||(27187855-27188119)
chr4 (150-320)||(31356381-31356551)
[»] chr3 (5 HSPs)
chr3 (150-320)||(21848842-21849012)
chr3 (150-320)||(54170112-54170282)
chr3 (56-320)||(9699298-9699562)
chr3 (122-320)||(43551511-43551710)
chr3 (238-325)||(22930162-22930249)
[»] chr1 (3 HSPs)
chr1 (150-320)||(26313232-26313402)
chr1 (150-320)||(39795614-39795784)
chr1 (21-107)||(30643044-30643130)


Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-169; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 10682693 - 10683012
Alignment:
Q  1 ccacacacatctgagtatattacattcagaatctcagttgatctatgagctgtgtttgaacttaatgcatttctaggttgcttgtctatcaagcaaacat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||    
T  10682693 ccacacacatctgagtatattacattcagaatctcagttgatctatgagctgtgtttgaacttaatgcatttctaagttgctggcctatcaagcaaacat 10682792  T
Q  101 cacaaactttctctggtacattcaattttggtgctccttggatcaattatttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctata 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10682793 cccaaactttctctggtacattcaattttggtgctccttggatcaattatttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctata 10682892  T
Q  201 gtaccagaaccaactaacttcattgcttacagttgttgataaacatttcaattcaacaactttcatatttgctaaaaatgttttattttttgcaagagga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10682893 gtaccagaaccaactaacttcattgcttacagttgttgataaacatttcaactcaacaactttcatatttgctaaaaatgttttattttttgcaagagga 10682992  T
Q  301 gttttcaaaactaacctttg 320  Q
    ||||||||||||||||||||    
T  10682993 gttttcaaaactaacctttg 10683012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 150 - 320
Target Start/End: Original strand, 200452 - 200622
Alignment:
Q  150 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 249  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||||||| ||||||   ||||  | |  |||||||| |||    
T  200452 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccaactatcttcatcttttaccatagcagataaacagttc 200551  T
Q  250 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttg 320  Q
    | ||| ||| |||||||||| | || |||| ||| |||| ||||||||||||||||||||||||||||||||    
T  200552 agttctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaaaactaacctttg 200622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 150 - 320
Target Start/End: Original strand, 315289 - 315459
Alignment:
Q  150 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 249  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||||||| ||||||   ||||  | |  |||||||| |||    
T  315289 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccaactatcttcatcttttaccatagcagataaacagttc 315388  T
Q  250 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttg 320  Q
    | ||| ||| |||||||||| | || |||| ||| |||| ||||||||||||||||||||||||||||||||    
T  315389 agttctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaaaactaacctttg 315459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 150 - 320
Target Start/End: Original strand, 30408571 - 30408741
Alignment:
Q  150 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 249  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||||||| ||||||   ||||  | |  |||||||| |||    
T  30408571 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccaactatcttcatcttttaccatagcagataaacagttc 30408670  T
Q  250 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttg 320  Q
    | ||| ||| |||||||||| | || |||| ||| |||| ||||||||||||||||||||||||||||||||    
T  30408671 agttctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaaaactaacctttg 30408741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 150 - 320
Target Start/End: Original strand, 43810251 - 43810421
Alignment:
Q  150 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 249  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||||||| ||||||   ||||  | |  |||||||| |||    
T  43810251 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccaactatcttcatcttttaccatagcagataaacagttc 43810350  T
Q  250 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttg 320  Q
    | ||| ||| |||||||||| | || |||| ||| |||| ||||||||||||||||||||||||||||||||    
T  43810351 agttctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaaaactaacctttg 43810421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 224
Target Start/End: Complemental strand, 30049343 - 30049134
Alignment:
Q  16 tatattacattcagaatctcagttgatctatgagctgtgtttgaacttaatgcatttctaggttgcttgtctatcaagcaaac-atcacaaactttctct 114  Q
    |||| ||||||||  | ||| ||| ||||||||| ||| |||| ||| |||||||||||||||||||||| ||||||  |||  |||||| | |||||||    
T  30049343 tatactacattcaacacctctgttaatctatgagttgtatttgcactgaatgcatttctaggttgcttgtttatcaaaaaaaatatcacatattttctct 30049244  T
Q  115 ggtacattcaattttggtgctccttggatcaattatttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaac 214  Q
    |||| |||||| |||||| |||||   ||||||| ||  ||||| || ||| | |||| ||||||||||||||| |||||||| |||| ||| ||| |||    
T  30049243 ggtatattcaactttggtactcctaaaatcaattcttcgtcaactaactgattaagacttctaaaatttaaatgaccaaatctgtagtcccataactaac 30049144  T
Q  215 taacttcatt 224  Q
    || |||||||    
T  30049143 tatcttcatt 30049134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 150 - 320
Target Start/End: Complemental strand, 16796058 - 16795888
Alignment:
Q  150 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 249  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||||||| ||||||   ||||  | |  |||||||| |||    
T  16796058 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccaactatcttcatcttttaccatagcagataaacagttc 16795959  T
Q  250 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttg 320  Q
    | ||| ||| |||||||||| | || |||| ||| |||| ||||||||||||||||||||||||||||||||    
T  16795958 agttctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaaaactaacctttg 16795888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 150 - 320
Target Start/End: Original strand, 40370015 - 40370185
Alignment:
Q  150 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 249  Q
    ||||||||| |||||  | |||| ||||||||| | ||| ||||||||||||| ||| ||||| ||| ||||||   ||||  | |  |||||||| |||    
T  40370015 tttatcaaccaattggttaagacctctaaaattgagatgaccaaatctatagtgccataaccagctatcttcatcttttaccatagcagataaacagttc 40370114  T
Q  250 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttg 320  Q
    ||||| |||||||||||||| | || |||| ||| |||| ||||||||||||||||||||||||||||||||    
T  40370115 aattctacaactttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaaaactaacctttg 40370185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 150 - 320
Target Start/End: Complemental strand, 12020678 - 12020508
Alignment:
Q  150 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 249  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||| ||| ||||||   ||||  | |  |||||||| |||    
T  12020678 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccagctatcttcatcttttaccatagcagataaacagttc 12020579  T
Q  250 aattcaacaactttcatatttgctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttg 320  Q
    ||||| ||| |||||||||| |    ||| ||| |||| ||||||||||||||||||||||||||||||||    
T  12020578 aattctacagctttcatattggtctgaaaggttctattctttgcaagaggagttttcaaaactaacctttg 12020508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 150 - 320
Target Start/End: Complemental strand, 30697185 - 30697015
Alignment:
Q  150 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 249  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||| ||| ||||||   ||||  | |  |||||||| |||    
T  30697185 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccagctatcttcatcttttaccatagcagataaacagttc 30697086  T
Q  250 aattcaacaactttcatatttgctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttg 320  Q
    ||||| ||| |||||||||| |    ||| ||| |||| ||||||||||||||||||||||||||||||||    
T  30697085 aattctacagctttcatattggtctgaaaggttatattctttgcaagaggagttttcaaaactaacctttg 30697015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 320
Target Start/End: Original strand, 7102142 - 7102312
Alignment:
Q  150 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 249  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||| | ||| ||||||||| ||||||   ||||  | |  |||||||| |||    
T  7102142 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatattgccataaccaactatcttcatcttttaccatagcagataaacagttc 7102241  T
Q  250 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttg 320  Q
    | ||| ||| |||||||||| | || |||| ||| |||| ||||||||||||||||||||||||||||||||    
T  7102242 agttctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaaaactaacctttg 7102312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 320
Target Start/End: Complemental strand, 37679425 - 37679255
Alignment:
Q  150 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 249  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||| ||| ||||||   ||||  |    |||||||| |||    
T  37679425 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccagctatcttcatcttttaccatatcagataaacagttc 37679326  T
Q  250 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttg 320  Q
    ||||| ||| |||||||||| | || |||| ||| |||| ||||||||||||||||||||||||||||||||    
T  37679325 aattctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaaaactaacctttg 37679255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 320
Target Start/End: Complemental strand, 10276325 - 10276243
Alignment:
Q  238 gataaacatttcaattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttg 320  Q
    |||||||| |||||||| ||| |||||||||| | || |||| ||| |||| ||||||||||||||||||||||||||||||||    
T  10276325 gataaacagttcaattctacagctttcatattggtctgaaaa-gttatattctttgcaagaggagttttcaaaactaacctttg 10276243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 150 - 320
Target Start/End: Complemental strand, 36672440 - 36672270
Alignment:
Q  150 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 249  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||||||| ||||||   ||||  |||  |||||||| |||    
T  36672440 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccaactatcttcatcttttaccattgcagataaacagttc 36672341  T
Q  250 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttg 320  Q
    | ||| ||| |||||||||| | || |||| ||| |||| ||||||||||||||||||||||||||||||||    
T  36672340 agttctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaaaactaacctttg 36672270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 150 - 320
Target Start/End: Complemental strand, 8052781 - 8052611
Alignment:
Q  150 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 249  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||||||| ||||||   ||||  | |  |||||||| |||    
T  8052781 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccaactatcttcatcttttaccatagcagataaacagttc 8052682  T
Q  250 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttg 320  Q
    | ||| ||| |||||||||| | || |||| ||| |||| ||||||||||||||||||||||||||||||||    
T  8052681 agttctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaaaactaacctttg 8052611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 320
Target Start/End: Original strand, 13269387 - 13269469
Alignment:
Q  238 gataaacatttcaattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttg 320  Q
    |||||||| ||||| || |||||||||||||| | || ||||| || |||| |||||||||||||||||||| |||||||||||    
T  13269387 gataaacagttcaactctacaactttcatattggtctgaaaat-ttctattctttgcaagaggagttttcaatactaacctttg 13269469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 320
Target Start/End: Original strand, 35953200 - 35953370
Alignment:
Q  150 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 249  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||| || || ||||||   ||||  |    |||||||| |||    
T  35953200 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataacaaaatatcttcatcttttaccataacagataaacagttc 35953299  T
Q  250 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttg 320  Q
    || || ||| |||||||||| | || |||| ||| |||| |||||||||||||||||||| |||||||||||    
T  35953300 aaatctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaatactaacctttg 35953370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 150 - 320
Target Start/End: Original strand, 47633 - 47803
Alignment:
Q  150 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 249  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||| ||| ||||||   ||||  | |  |||||||| |||    
T  47633 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccagctatcttcatcttttaccatagcagataaacagttc 47732  T
Q  250 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttg 320  Q
    ||||| ||| |||||||||| | || |||| ||| |||| ||||||||||||||||||||||||||||||||    
T  47733 aattctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaaaactaacctttg 47803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 150 - 320
Target Start/End: Original strand, 7942851 - 7943021
Alignment:
Q  150 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 249  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||||||| ||||||   ||||  | |  |||||||| |||    
T  7942851 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccaactatcttcatcttttaccatagcagataaacagttc 7942950  T
Q  250 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttg 320  Q
    | ||| ||| |||||||||| | || |||| ||| |||| ||||||||||||||||||||||||||||||||    
T  7942951 agttctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaaaactaacctttg 7943021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 150 - 320
Target Start/End: Complemental strand, 27758786 - 27758616
Alignment:
Q  150 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 249  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||||||| ||||||   ||||  | |  |||||||| |||    
T  27758786 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccaactatcttcatcttttaccatagcagataaacagttc 27758687  T
Q  250 aattcaacaactttcatatttgctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttg 320  Q
    | ||| ||| |||||||||| |    ||| ||| |||| ||||||||||||||||||||||||||||||||    
T  27758686 agttctacagctttcatattggtctgaaaggttctattctttgcaagaggagttttcaaaactaacctttg 27758616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 150 - 320
Target Start/End: Original strand, 8318272 - 8318442
Alignment:
Q  150 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 249  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||||||| ||||||   ||||  | |  |||||||| |||    
T  8318272 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccaactatcttcatcttttaccatagcagataaacagttc 8318371  T
Q  250 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttg 320  Q
    | ||| ||| |||||||||| | || |||| ||| |||| ||||||||||||||||||||||||||||||||    
T  8318372 agttctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaaaactaacctttg 8318442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 142 - 320
Target Start/End: Original strand, 17889388 - 17889568
Alignment:
Q  142 atcaattatttatcaacaaattgagtgagacgtctaaaatttaaatggccaaa--tctatagtaccagaaccaactaacttcattgcttacagttgttga 239  Q
    |||| |||||||||||| |||||| | |||| ||||||||| | ||| |||||  |||||||| ||| ||||| ||| ||||||   ||||  | |  ||    
T  17889388 atcatttatttatcaaccaattgattaagacctctaaaattgagatgaccaaaaatctatagtgccataaccagctatcttcatcttttaccatagcaga 17889487  T
Q  240 taaacatttcaattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttg 320  Q
    |||||| |||||||| ||| |||||||||| | || |||| ||| |||| ||||||||||||||||||||||||||||||||    
T  17889488 taaacagttcaattctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaaaactaacctttg 17889568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 275 - 320
Target Start/End: Complemental strand, 17161359 - 17161314
Alignment:
Q  275 aaaatgttttattttttgcaagaggagttttcaaaactaacctttg 320  Q
    |||| ||| ||||||||||||||||||||||||| |||||||||||    
T  17161359 aaaaagttctattttttgcaagaggagttttcaatactaacctttg 17161314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 150 - 320
Target Start/End: Complemental strand, 44148947 - 44148777
Alignment:
Q  150 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 249  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||||||| ||||||   ||||  | |  |||||||| |||    
T  44148947 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccaactatcttcatcttttaccatagcagataaacagttc 44148848  T
Q  250 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttg 320  Q
    | ||| ||| |||||||||| | || |||| ||| |||| ||||||||||||||||||||||||||||||||    
T  44148847 agttctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaaaactaacctttg 44148777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 320
Target Start/End: Complemental strand, 27188119 - 27187855
Alignment:
Q  56 ttgaacttaatgcatttctaggttgcttgtctatcaagcaaacatcacaaactttctctggtacattcaatttt-ggtgctccttggatcaattatttat 154  Q
    ||||||| |||||| |||||||||||||| | | |||||||  |||||||||| | |  ||||  | ||||||| ||| ||||  | |||| || |||||    
T  27188119 ttgaactgaatgcacttctaggttgcttgcccaacaagcaagtatcacaaactctgttaggtatct-caattttaggtactcccagaatcatttctttat 27188021  T
Q  155 caacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttcaattc 254  Q
    |||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||| |  || ||||||   ||||  | |  |||||||| ||||| ||    
T  27188020 caaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataactagttatcttcatcttttaccatagcagataaacagttcaactc 27187921  T
Q  255 aacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttg 320  Q
     ||| |||||||||| | || |||| ||| |||| |||||||||||||||||||| |||||||||||    
T  27187920 tacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaatactaacctttg 27187855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 320
Target Start/End: Complemental strand, 31356551 - 31356381
Alignment:
Q  150 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 249  Q
    ||||||| | |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||| ||| ||| ||   ||||  | |  |||||||| |||    
T  31356551 tttatcatccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccagctatctttatcttttaccatagcagataaacagttc 31356452  T
Q  250 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttg 320  Q
    || || ||| |||||||||| | || |||| ||| |||| |||||||||||||||||||| |||||||||||    
T  31356451 aactctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaatactaacctttg 31356381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 150 - 320
Target Start/End: Complemental strand, 21849012 - 21848842
Alignment:
Q  150 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 249  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||| ||| ||||||   ||||  | |  |||||||| |||    
T  21849012 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccagctatcttcatcttttaccatagcagataaacagttc 21848913  T
Q  250 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttg 320  Q
    ||||| ||| |||||||||| | || |||| ||| |||| ||||||||||||||||||||||||||||||||    
T  21848912 aattctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaaaactaacctttg 21848842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 150 - 320
Target Start/End: Original strand, 54170112 - 54170282
Alignment:
Q  150 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 249  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||||||| ||||||   ||||  | |  |||||||| |||    
T  54170112 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccaactatcttcatcttttaccatagcagataaacagttc 54170211  T
Q  250 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttg 320  Q
    | ||| ||| |||||||||| | || |||| ||| |||| ||||||||||||||||||||||||||||||||    
T  54170212 agttctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaaaactaacctttg 54170282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 320
Target Start/End: Complemental strand, 9699562 - 9699298
Alignment:
Q  56 ttgaacttaatgcatttctaggttgcttgtctatcaagcaaacatcacaaactttctctggtacattcaatttt-ggtgctccttggatcaattatttat 154  Q
    ||||||| |||||| |||||||||||||| | | |||||||  |||||||||| | |  ||||  | ||||||| ||| ||||  | |||| || |||||    
T  9699562 ttgaactgaatgcacttctaggttgcttgcccaacaagcaagtatcacaaactctgttaggtatct-caattttaggtactcccagaatcatttctttat 9699464  T
Q  155 caacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttcaattc 254  Q
    |||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||| |  || ||||||   ||||  | |  |||||||| ||||| ||    
T  9699463 caaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataactagttatcttcatcttttaccatagcagataaacagttcaactc 9699364  T
Q  255 aacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttg 320  Q
     ||| |||||||||| | || |||| ||| |||| |||||||||||||||||||| |||||||||||    
T  9699363 tacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaatactaacctttg 9699298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 320
Target Start/End: Complemental strand, 43551710 - 43551511
Alignment:
Q  122 tcaatttt-ggtgctccttggatcaattatttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaactt 220  Q
    |||||||| ||| ||||| | |||| || ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||| ||| |||    
T  43551710 tcaattttaggtactcctagaatcatttctttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccagctatctt 43551611  T
Q  221 cattgcttacagttgttgataaacatttcaattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaaccttt 319  Q
    |||   | ||  | |  |||||||| || || || ||| |||||||||| | || |||| ||| ||||||||||||||||| ||||||| ||||||||||    
T  43551610 catctttaaccatagcagataaacaatttaactctacagctttcatattggtctgaaaa-gttctattttttgcaagaggaattttcaatactaaccttt 43551512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 325
Target Start/End: Original strand, 22930162 - 22930249
Alignment:
Q  238 gataaacatttcaattcaacaactttcatatttgctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttgcttct 325  Q
    ||||| || ||||||| | ||||||||||||  |   ||||||||||||| |||||||| |||||||||| |||||||||||| ||||    
T  22930162 gataagcaattcaatttagcaactttcatatcagtctaaaatgttttattctttgcaaggggagttttcataactaacctttgattct 22930249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 150 - 320
Target Start/End: Complemental strand, 26313402 - 26313232
Alignment:
Q  150 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 249  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||||||| ||||||   ||||  | |  |||||||| |||    
T  26313402 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccaactatcttcatcttttaccatagcagataaacagttc 26313303  T
Q  250 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttg 320  Q
    | ||| ||| |||||||||| | || |||| ||| |||| ||||||||||||||||||||||||||||||||    
T  26313302 agttctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaaaactaacctttg 26313232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 150 - 320
Target Start/End: Complemental strand, 39795784 - 39795614
Alignment:
Q  150 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 249  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||||||| ||||||   ||||  | |  |||||||| |||    
T  39795784 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccaactatcttcatcttttaccatagcagataaacagttc 39795685  T
Q  250 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttg 320  Q
    | ||| ||| |||||||||| | || |||| ||| |||| ||||||||||||||||||||||||||||||||    
T  39795684 agttctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaaaactaacctttg 39795614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 30643130 - 30643044
Alignment:
Q  21 tacattcagaatctcagttgatctatgagctgtgtttgaacttaatgcatttctaggttgcttgtctatcaagcaaacatcacaaac 107  Q
    |||||||||||||||  ||||||||||||| || || ||  | ||||||| ||||||||||||  |||||||||||  |||||||||    
T  30643130 tacattcagaatctcttttgatctatgagcagtattggatttaaatgcatctctaggttgcttccctatcaagcaagtatcacaaac 30643044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University