View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3756_high_15 (Length: 316)
Name: NF3756_high_15
Description: NF3756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3756_high_15 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 207519 - 207211
Alignment:
| Q |
1 |
aactctccaccaacaccttca---actcctccatcaccttcacctaatttcctttcaaggcaaaattcatcaacttcttcaaggcttagtagtggtttca |
97 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
207519 |
aactctccaccaacaccttcatcaacttctccatcaccatcacctaatttcctttcaaggcaaaattcatcaacttcttcaaggcttagtagtggtttca |
207420 |
T |
|
| Q |
98 |
accttccaccttctctaaccatcccaaacccttcttggggagctactactactactatgtctatgtctgatcagtttcaaaaccatgatgattcagatcc |
197 |
Q |
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|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
207419 |
accttccaccttctctaaccatccctaacccttcttggggagctactactactactatgtctatgtctgatcagtttcaaaaccatgatgattcagatcc |
207320 |
T |
|
| Q |
198 |
aattgatgatttccaactccaagaccaactttctttcttgaatgatggttctgatccttcatatggttggggaggtaattcttctcttcataggagaagt |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
207319 |
aattgatgatttccaactccaagaccaactttctttcttgaatgatggttctgatccttcatatggttggggaggtaattcttctcttcataggagaagt |
207220 |
T |
|
| Q |
298 |
tgttctgtg |
306 |
Q |
| |
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||||||||| |
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| T |
207219 |
tgttctgtg |
207211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 14609858 - 14610166
Alignment:
| Q |
1 |
aactctccaccaacaccttca---actcctccatcaccttcacctaatttcctttcaaggcaaaattcatcaacttcttcaaggcttagtagtggtttca |
97 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14609858 |
aactctccaccaacaccttcatcaacttctccatcaccatcacctaatttcctttcaaggcaaaattcatcaacttcttcaaggcttagtagtggtttca |
14609957 |
T |
|
| Q |
98 |
accttccaccttctctaaccatcccaaacccttcttggggagctactactactactatgtctatgtctgatcagtttcaaaaccatgatgattcagatcc |
197 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14609958 |
accttccaccttctctaaccatccctaacccttcttggggagctactactactactatgtctatgtctgatcagtttcaaaaccatgatgattcagatcc |
14610057 |
T |
|
| Q |
198 |
aattgatgatttccaactccaagaccaactttctttcttgaatgatggttctgatccttcatatggttggggaggtaattcttctcttcataggagaagt |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14610058 |
aattgatgatttccaactccaagaccaactttctttcttgaatgatggttctgatccttcatatggttggggaggtaattcttctcttcataggagaagt |
14610157 |
T |
|
| Q |
298 |
tgttctgtg |
306 |
Q |
| |
|
||||||||| |
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|
| T |
14610158 |
tgttctgtg |
14610166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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