View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3756_high_16 (Length: 315)
Name: NF3756_high_16
Description: NF3756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3756_high_16 |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 30 - 244
Target Start/End: Original strand, 8434454 - 8434676
Alignment:
| Q |
30 |
aaattgatccacattaacatagactccagaaattaagagtacaagaagttataaagaacaacagattacaaatt-------taaaaaatttcaaatttgt |
122 |
Q |
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| T |
8434454 |
aaattgatccacgttaacatagactccagaaattaagagtacaagaagttataaagaacaacagattacaaattacaaatttaaaaaatttcaaatttgt |
8434553 |
T |
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| Q |
123 |
atatcgatcgccctgtataagttctcaaccccaacacacacaaaa-atagcccataggtcagtagtaaacaaagctggaggaaagttgcttatcaactca |
221 |
Q |
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| T |
8434554 |
atatcgatcgccctgtataagttctcaaccccaacacacaaaaaaaatagcccataggtcagtagtaaacaaagctggaggatagttgcttatcaactca |
8434653 |
T |
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| Q |
222 |
acatcgaatcattgttgcactga |
244 |
Q |
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| T |
8434654 |
acatcgaatcattgttgcactga |
8434676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 157
Target Start/End: Original strand, 8431525 - 8431631
Alignment:
| Q |
58 |
gaaattaagagtacaagaagttataaagaacaacaga-------ttacaaatttaaaaaatttcaaatttgtatatcgatcgccctgtataagttctcaa |
150 |
Q |
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| T |
8431525 |
gaaattaggagtacaagaagttatagagagcaacagaatgcagattacaaatttaaaaaatttcaaatttgtatgtcagtcaccgcctataagttctcaa |
8431624 |
T |
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| Q |
151 |
ccccaac |
157 |
Q |
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| T |
8431625 |
ccccaac |
8431631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 58 - 244
Target Start/End: Complemental strand, 75953 - 75759
Alignment:
| Q |
58 |
gaaattaagagtacaagaagttataaagaacaac-agattacaaatt-------taaaaaatttcaaatttgtatatcgatcgccctgtataagttctca |
149 |
Q |
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| T |
75953 |
gaaattaagagtacaagaagttataaagaacaaccagattacaaattacgaatttaaaaaatttcaaatttgcatctcaatcgccctgtataagttctca |
75854 |
T |
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| Q |
150 |
accccaacacacacaaaaatagcccataggtcagtagtaaacaaagctggaggaaagttgcttatcaactcaacatcgaatcattgttgcactga |
244 |
Q |
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| T |
75853 |
accccaactcacaaaaaaatagaccataggtcggtcgtaaacaaagctagaggatagttgcctatcaactcaacatcgaatcattgttacactga |
75759 |
T |
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