View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3756_high_17 (Length: 311)
Name: NF3756_high_17
Description: NF3756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3756_high_17 |
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Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 4 - 300
Target Start/End: Complemental strand, 32346168 - 32345872
Alignment:
| Q |
4 |
tatttctcttaagataacacaaaaataaaatgtatactttaggatgtctacgtcagccttgttgttccacctttacctcattgaacctcgaaacatcttt |
103 |
Q |
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| T |
32346168 |
tatttctcttaagataacacaaaaataaaatgtatactttaggatgtttacgtcagccttgttgttccacctttacctcattgaacctcgaaacatcttt |
32346069 |
T |
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| Q |
104 |
tgccttcttgaatacttgcctccaactacactgagccttttaagtagctccataacttatcgccattacctcttcaacctctggattgattaatttatgt |
203 |
Q |
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| T |
32346068 |
tgccttcttgaatacttgcctccaactacactgagccttttaagtagctccataacttatcaccataacctcttcaacctctggattgattaatttatgt |
32345969 |
T |
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| Q |
204 |
cctcttgaagatcttcttgccttcaattacccttggtcttttaggaatcccacaagtcgttccataccttcttcaacccctgaaatgtgcttctctg |
300 |
Q |
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| T |
32345968 |
cctcttgaagatcttcttgtcttcaattacccttggtcttttaggaatcccacaagtcgtttcataccttcttcaactcctgaaatgtgcttctctg |
32345872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 280
Target Start/End: Original strand, 10456153 - 10456234
Alignment:
| Q |
200 |
atgtcctcttgaagatcttcttgccttcaattacccttggtcttttagg-aatcccacaagtcgttccataccttcttcaac |
280 |
Q |
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| T |
10456153 |
atgtcttcttgaatatctccttacatccaatcacccttggtcttttaggtaatcccacaagttgtgccatacattcttcaac |
10456234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 202 - 283
Target Start/End: Original strand, 37048262 - 37048344
Alignment:
| Q |
202 |
gtcctcttgaagatcttcttgccttcaattacccttggtcttttagg-aatcccacaagtcgttccataccttcttcaacccc |
283 |
Q |
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| T |
37048262 |
gtcctcttgaagattctcttgcctccaattacccttggtcttttaggtaatcccataagccattccataccttcttcaacccc |
37048344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 29797096 - 29797170
Alignment:
| Q |
206 |
tcttgaagatcttcttgccttcaattacccttggtcttttagg-aatcccacaagtcgttccataccttcttcaa |
279 |
Q |
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|||||||||| | ||||| | |||||||| ||||||||||||| ||||||||||||| |||||||| ||| |||| |
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| T |
29797096 |
tcttgaagatttccttgcatgcaattaccattggtcttttaggtaatcccacaagtcattccatacattcctcaa |
29797170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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