View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3756_high_18 (Length: 311)
Name: NF3756_high_18
Description: NF3756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3756_high_18 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 12 - 311
Target Start/End: Complemental strand, 6221784 - 6221485
Alignment:
| Q |
12 |
gcagagatgcttttgaaacatgagtttatctcaggtgatgaaactgtttcattggtgaaagagttgatgaatgagttgccattgtcaatatcaccatctc |
111 |
Q |
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| T |
6221784 |
gcagagatgcttttgaaacatgagtttatctcaggtgatgaaactgtttcattggtgaaagagttgatcaatgagttgccattgtcaatatcaccatctc |
6221685 |
T |
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| Q |
112 |
cgagaactcacttcgattttcctcgttgggcttcttctagtgttacgactttgcctcctgatgcaaaggaagtatgtgaactgaaatttgagcaaggttt |
211 |
Q |
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| T |
6221684 |
cgagaactcacttcgattttcctcattgggcttcttctagtgttacgactttgcctcctgatgcaaaggaagtatgtgaactgaaatttgagcaaggttt |
6221585 |
T |
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| Q |
212 |
ttgttcaccgggcgagaggcttcaacgactagtcacaaatgaaagaccgttagattggtcagaatccgatgcttggtgttttgttcggtcaaattaaaat |
311 |
Q |
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| T |
6221584 |
ttgttcaccgggcgagagtcttcaacgactagtcacaaatgaaagaccgttagattggtcagaatccgatgcttggtgttttgttcggtcaaattaaaat |
6221485 |
T |
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