View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3756_high_3 (Length: 427)
Name: NF3756_high_3
Description: NF3756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3756_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 28 - 415
Target Start/End: Complemental strand, 48483183 - 48482796
Alignment:
| Q |
28 |
actaatttgcatgcttgttttgataactaaatgaattctgtcagggggtataaaaaatgacaattatacaatataannnnnnnnnnnnngtcattccatt |
127 |
Q |
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| T |
48483183 |
actaatttgcatgcttgttttgataactaaatgaattctgtcggggggtataaaaaatgacaatcatacaatataatttttttatttttgtcattccatt |
48483084 |
T |
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| Q |
128 |
ccccaacgttatttcattacccaatatgacttatacaaaacactttttactcaagttattggggtccttttctagttgtgttacacttttactcacattc |
227 |
Q |
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| T |
48483083 |
ccccaacgttatttcattacccaatatgacttatacaaaacactttttactcaagttattggggtccttttctagttgtgttacacttttactcacattc |
48482984 |
T |
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| Q |
228 |
atttttcctatctttcttgtccgcgttggtgccagacttgtgtgatctgtaaacaaagtcatggttcctgtacaagttgttgcaagtgtgctacatattt |
327 |
Q |
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| T |
48482983 |
attttttctatctttcttgtccgcgttggtgccagacttgtgtgatctgtaaacaaagtcatggttcctgtacaagttgttgcaagtgtgctacatattt |
48482884 |
T |
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| Q |
328 |
tcacgtgatgtgtgcatcaaggatgggatatagcatggcggtaagtatgatgatccttttacttaaatttaaactagtccttgatctg |
415 |
Q |
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| T |
48482883 |
tcacgtgatgtgtgcatcaaggatgggatatagcatggcggtaagtatgatgatccttttacttaaatttaaactagtccttgatctg |
48482796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 260 - 348
Target Start/End: Original strand, 10037573 - 10037661
Alignment:
| Q |
260 |
cagacttgtgtgatctgtaaacaaagtcatggttcctgtacaagttgttgcaagtgtgctacatattttcacgtgatgtgtgcatcaag |
348 |
Q |
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| T |
10037573 |
cagacctgtgtaatttgtaaacaaagccatggttcttgtacaagttgttgcaagtgttctactcattttcatgtaatgtgcgcatcaag |
10037661 |
T |
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