View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3756_high_4 (Length: 361)
Name: NF3756_high_4
Description: NF3756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3756_high_4 |
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| [»] scaffold1585 (2 HSPs) |
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| [»] scaffold1696 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 82 - 358
Target Start/End: Complemental strand, 38161789 - 38161513
Alignment:
| Q |
82 |
gggttgtgagggacatgacatggaaacgagaaggaagtgggaacacaacacaacaagtacaacactgttactacgacttgttcaaatcaaatcagcaaac |
181 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38161789 |
gggttgtgagggacatgacatggaaacgagaaggaagtgggaacacaacacaacaagtacaacactgttactacgacttgttcaaatcaaatcggcaaac |
38161690 |
T |
|
| Q |
182 |
aacatataaccagcactctttctttgtttgtttgtttctgaattgagaaaatagaagaagaattagatctgataaagaaagaatgtcaagagggagatct |
281 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38161689 |
aacatataaccagcactctttgtttgtttgtttgtttctgaattgagaaaatagaagaagaattagatctgataaagaaagaatgtcaagagggagatct |
38161590 |
T |
|
| Q |
282 |
gattcatcatcatcatggttaagatggtgtttggttttgtttgcaatgatatcagctttaagggtctgtggtgctgc |
358 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||| |
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| T |
38161589 |
gattcatcatcatcatggttaagatggtgtttggttttgtttgcaatgatatcagctttaatggtgtgtggtcctgc |
38161513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 38161870 - 38161818
Alignment:
| Q |
1 |
tcgtagttgaagattcttctttctctatttacatattatactatgaatgaacg |
53 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38161870 |
tcgtagttgaagattcttctttctctatttacatattatactatgaatgaacg |
38161818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1585 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: scaffold1585
Description:
Target: scaffold1585; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 82 - 353
Target Start/End: Complemental strand, 1403 - 1137
Alignment:
| Q |
82 |
gggttgtgagggacatgacatggaaacgagaaggaagtgggaacacaacacaacaagtacaacactgttactacgacttgttcaaatcaaatcagcaaac |
181 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||| |||||| |
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| T |
1403 |
gggttgtgagggacatgacatggaaacgggaaggaagtgggaacacaacacaacaaatacaacactgttactacaactcgttcaaatcaaatcggcaaac |
1304 |
T |
|
| Q |
182 |
aacatataaccagcactctttctttgtttgtttgtttctgaattgagaaaatagaagaagaattagatctgataaagaaagaatgtcaagagggagatct |
281 |
Q |
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|||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
1303 |
aacatataaccagc-ctctttctttgtttgtttat----gaattgagaaaatagaagaagaattagatttgataaagaaagtatgtcaagagggagatct |
1209 |
T |
|
| Q |
282 |
gattcatcatcatcatggttaagatggtgtttggttttgtttgcaatgatatcagctttaagggtctgtggt |
353 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
1208 |
gattcatcatcatcatggttaagatggagtttggttttgtttgcaatgatatcagctttaatggtgtgtggt |
1137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1585; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 1481 - 1432
Alignment:
| Q |
4 |
tagttgaagattcttctttctctatttacatattatactatgaatgaacg |
53 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1481 |
tagttgaagattcttctttctctatttaaatattatactatgaatgaacg |
1432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1696 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: scaffold1696
Description:
Target: scaffold1696; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 144 - 353
Target Start/End: Original strand, 1213 - 1417
Alignment:
| Q |
144 |
cactgttactacgacttgttcaaatcaaatcagcaaacaacatataaccagcactctttctttgtttgtttgtttctgaattgagaaaatagaagaagaa |
243 |
Q |
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|||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
1213 |
cactgttactacgactcgttcaaatcaaatcggcaaacaacatataaccagc-ctctttctttg----tttgtttatgaattgagaaaatagaagaagaa |
1307 |
T |
|
| Q |
244 |
ttagatctgataaagaaagaatgtcaagagggagatctgattcatcatcatcatggttaagatggtgtttggttttgtttgcaatgatatcagctttaag |
343 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1308 |
ttagatctgataaagaaagtatgtcaagagggagatctgattcatcatcatcatggttaagatggagtttggttttgtttgcaatgatatcagctttaat |
1407 |
T |
|
| Q |
344 |
ggtctgtggt |
353 |
Q |
| |
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||| |||||| |
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| T |
1408 |
ggtgtgtggt |
1417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1696; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 1106 - 1155
Alignment:
| Q |
4 |
tagttgaagattcttctttctctatttacatattatactatgaatgaacg |
53 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1106 |
tagttgaagattcttctttctctatttaaatattatactatgaatgaacg |
1155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 140 - 358
Target Start/End: Complemental strand, 22099986 - 22099762
Alignment:
| Q |
140 |
acaacactgttactacgacttgttcaaatcaaatcagcaaacaacatataaccagcac---tctttctttgtttgtttgtttctgaattgagaaaataga |
236 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||| |||||||||| | ||||||||| ||||||| ||||||||||||||| ||||| |
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| T |
22099986 |
acaacactgttactaggacttgttcaaatcaaatcggcaaacaccatataaccaaccagcttctttctttctttgtttctttctgaattgagaagataga |
22099887 |
T |
|
| Q |
237 |
agaagaattagatctgataaagaaagaatgtcaagagggagatctgattcatcatca---tcatggttaagatggtgtttggttttgtttgcaatgatat |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
22099886 |
agaagaattagatctgataaagaaagaatgtcaagaggaagatctgattcatcatcatcatcatggttaagatggtgtttggttttgtttgcaatgatat |
22099787 |
T |
|
| Q |
334 |
cagctttaagggtctgtggtgctgc |
358 |
Q |
| |
|
||||||||| ||| |||||| |||| |
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| T |
22099786 |
cagctttaatggtgtgtggtcctgc |
22099762 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 82 - 353
Target Start/End: Complemental strand, 18296985 - 18296710
Alignment:
| Q |
82 |
gggttgtgagggacatgacatggaaacgagaaggaagtgggaacacaacacaacaagtacaacactgttactacgacttgttcaaatcaaatcagcaaac |
181 |
Q |
| |
|
||||||||||||||| ||| || |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||| | |
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| T |
18296985 |
gggttgtgagggacaggacttgagaacgagaatgaagtgggaacacggcacaacaagtacaacactgttactacgacttgttaaaatcaaatcggcaacc |
18296886 |
T |
|
| Q |
182 |
aacatataaccagcactct---ttctttgtttgtttgtttctgaattgagaaaatagaagaagaattagatctgataaagaaagaatgtcaagagggaga |
278 |
Q |
| |
|
|||||||||||||||| |||||| ||| ||||||| ||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||| |
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|
| T |
18296885 |
aacatataaccagcacatagtattctttatttctttgtttgtgaattgagaagatagaagaa---ttagatctgataaagaaaaaatgtcaagagggaga |
18296789 |
T |
|
| Q |
279 |
tctgattc----atcatcatcatggttaagatggtgtttggttttgtttgcaatgatatcagctttaagggtctgtggt |
353 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| ||||||| ||| |||||| |
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|
| T |
18296788 |
tctgattcttcggtcatcatcatggttaagatggtgtttggttttatttgcgatgatatcggctttaatggtgtgtggt |
18296710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 18297069 - 18297022
Alignment:
| Q |
5 |
agttgaagattcttctttctctatttacatattatactatgaatgaacg |
53 |
Q |
| |
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||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
18297069 |
agttgaagatt-ttctttctctatttaaatattatactatgaatgaacg |
18297022 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 142 - 352
Target Start/End: Original strand, 44220152 - 44220366
Alignment:
| Q |
142 |
aacactgttactacgacttgttcaaatcaaatcagcaaacaacatataaccagcactct---ttctttgtttgtttgtttctgaattgagaaaatagaag |
238 |
Q |
| |
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|||||||||||||||||||| | |||||||||| || | ||||||||||||||||| |||||| ||| ||||||| ||||||||||| |||||| |
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|
| T |
44220152 |
aacactgttactacgacttgctaaaatcaaatcggccaccaacatataaccagcacatagtattctttatttctttgtttgtgaattgagaagatagaa- |
44220250 |
T |
|
| Q |
239 |
aagaattagatctgataaagaaagaatgtcaagagggagatctgattc----atcatcatcatggttaagatggtgtttggttttgtttgcaatgatatc |
334 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44220251 |
--gaattagatctgataaagaaaaaatgtcaagagggagatctgattcttcgttcatcatcatggttaagatggtgtttggttttgtttgcaatgatatc |
44220348 |
T |
|
| Q |
335 |
agctttaagggtctgtgg |
352 |
Q |
| |
|
||||||| ||| ||||| |
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|
| T |
44220349 |
ggctttaatggtgtgtgg |
44220366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 44220036 - 44220082
Alignment:
| Q |
7 |
ttgaagattcttctttctctatttacatattatactatgaatgaacg |
53 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
44220036 |
ttgaagattcttctttctctatttaaatattatactatgaatgaacg |
44220082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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