View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3756_high_8 (Length: 344)
Name: NF3756_high_8
Description: NF3756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3756_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 2 - 330
Target Start/End: Original strand, 35378903 - 35379231
Alignment:
| Q |
2 |
taaagtgggttgttcactttaaacgaggttatccaattatttgataatctaatnnnnnnnttatctattttaaatatttgaccaaattattgatattttg |
101 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35378903 |
taaagtgggttgttcactttaaacgaggttatccaattatttgataatctaataaaaaaattatctattttaaatatttgaccaaattattgatattttg |
35379002 |
T |
|
| Q |
102 |
taatatttgcagggatgatcaaatgttgttcactgcactcgtatattgtatagcatactttatatttcctatggcttctaacttaccatggtggagaata |
201 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35379003 |
taatatttgcagggatgatcaaatgttgttcactgtactcgtatattgtatagcatactttatatttcctatggcttctaacttaccatggtggagaata |
35379102 |
T |
|
| Q |
202 |
gatggtgtgattcttacagcaatattgcatgctggaccagtggaatttttatactattggcttcatagagcacttcatcatcattatctatactctcgtt |
301 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35379103 |
gatggtgtgattcttacagcaatattgcatgctggaccagtcgagtttttatactattggcttcatagagcacttcatcatcattatctatactctcgtt |
35379202 |
T |
|
| Q |
302 |
atcattctcatcatcattcttcaattgtc |
330 |
Q |
| |
|
|||||||||| |||||||||||||||||| |
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| T |
35379203 |
atcattctcaccatcattcttcaattgtc |
35379231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 106 - 329
Target Start/End: Original strand, 35354503 - 35354726
Alignment:
| Q |
106 |
atttgcagggatgatcaaatgttgttcactgcactcgtatattgtatagcatactttatatttcctatggcttctaacttaccatggtggagaatagatg |
205 |
Q |
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|||||||||||||||||||| |||||||||||||| ||||||| ||||| |||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35354503 |
atttgcagggatgatcaaatattgttcactgcactagtatattatataggatacatgatatttcctatggcttctaacttaccatggtggagaatagatg |
35354602 |
T |
|
| Q |
206 |
gtgtgattcttacagcaatattgcatgctggaccagtggaatttttatactattggcttcatagagcacttcatcatcattatctatactctcgttatca |
305 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35354603 |
gtgtgattcttacagcaatattgcatgctggaccagtggagtttttatactattggcttcatagagcacttcatcatcattatctatactctcgttatca |
35354702 |
T |
|
| Q |
306 |
ttctcatcatcattcttcaattgt |
329 |
Q |
| |
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|||||||| |||||||||||||| |
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| T |
35354703 |
ctctcatcaccattcttcaattgt |
35354726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 106 - 330
Target Start/End: Original strand, 35369648 - 35369872
Alignment:
| Q |
106 |
atttgcagggatgatcaaatgttgttcactgcactcgtatattgtatagcatactttatatttcctatggcttctaacttaccatggtggagaatagatg |
205 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| |||| | |||| |||| | ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35369648 |
atttgcagggatgaccaaattttgttcactgcactgttatactacataggatacatgatatttcctatggcttctaacttaccatggtggagaatagatg |
35369747 |
T |
|
| Q |
206 |
gtgtgattcttacagcaatattgcatgctggaccagtggaatttttatactattggcttcatagagcacttcatcatcattatctatactctcgttatca |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35369748 |
gtgtgattcttacagcaatattgcatgctggaccagtcgagtttttatactattggcttcatagagcacttcatcatcattatctatactctcgttatca |
35369847 |
T |
|
| Q |
306 |
ttctcatcatcattcttcaattgtc |
330 |
Q |
| |
|
|||||| |||||||||||||||||| |
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|
| T |
35369848 |
ttctcaccatcattcttcaattgtc |
35369872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 106 - 330
Target Start/End: Complemental strand, 19630728 - 19630504
Alignment:
| Q |
106 |
atttgcagggatgatcaaatgttgttcactgcactcgtatattgtatagcatactttatatttcctatggcttctaacttaccatggtggagaatagatg |
205 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||| | | |||| |||| ||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
19630728 |
atttgcagggatgatcaaatattgttgactgcactaaccttctatatactatacacaatatttcctatggctgctaacttaccatggtggagaacagatg |
19630629 |
T |
|
| Q |
206 |
gtgtgattcttacagcaatattgcatgctggaccagtggaatttttatactattggcttcatagagcacttcatcatcattatctatactctcgttatca |
305 |
Q |
| |
|
||||| |||||||||| | |||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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|
| T |
19630628 |
gtgtggttcttacagctctcttgcatgctggaccagtggagttcttatactattggctacatagagcacttcatcatcattatctatactctcgttacca |
19630529 |
T |
|
| Q |
306 |
ttctcatcatcattcttcaattgtc |
330 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
19630528 |
ttctcatcatcattcttcaattgtc |
19630504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 106 - 330
Target Start/End: Original strand, 19684069 - 19684293
Alignment:
| Q |
106 |
atttgcagggatgatcaaatgttgttcactgcactcgtatattgtatagcatactttatatttcctatggcttctaacttaccatggtggagaatagatg |
205 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| | | | || |||| ||| ||||||||||||||| | ||||||||||||||||||| ||||| |
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|
| T |
19684069 |
atttgcagggatgatcaaatattgttcactgcattaatgttttatatactttacacgatatttcctatggctgccaacttaccatggtggagaacagatg |
19684168 |
T |
|
| Q |
206 |
gtgtgattcttacagcaatattgcatgctggaccagtggaatttttatactattggcttcatagagcacttcatcatcattatctatactctcgttatca |
305 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| |||||||| || |
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| T |
19684169 |
gtgtgattcttacagctatcttgcatgctggaccagtggagttcttatactattggctacatagagcacttcatcatcattatctatattctcgttacca |
19684268 |
T |
|
| Q |
306 |
ttctcatcatcattcttcaattgtc |
330 |
Q |
| |
|
|||||| |||||||||||||||||| |
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|
| T |
19684269 |
ttctcaccatcattcttcaattgtc |
19684293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 234 - 329
Target Start/End: Complemental strand, 2258558 - 2258463
Alignment:
| Q |
234 |
tggaccagtggaatttttatactattggcttcatagagcacttcatcatcattatctatactctcgttatcattctcatcatcattcttcaattgt |
329 |
Q |
| |
|
|||||||||||| ||| | ||||||||| | || ||||||||||||||||||| || || ||| | ||||||||||||||||||||||| ||||| |
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|
| T |
2258558 |
tggaccagtggagtttctttactattggttacacagagcacttcatcatcatttcctctattctagatatcattctcatcatcattcttccattgt |
2258463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 229 - 329
Target Start/End: Complemental strand, 2280553 - 2280453
Alignment:
| Q |
229 |
catgctggaccagtggaatttttatactattggcttcatagagcacttcatcatcattatctatactctcgttatcattctcatcatcattcttcaattg |
328 |
Q |
| |
|
||||||||| |||| |||||| | || |||||| | || ||||||||||||||||||| || || ||| | ||||||||||||||||||||||| |||| |
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|
| T |
2280553 |
catgctggagcagttgaatttctttattattggttacacagagcacttcatcatcatttcctctattctagatatcattctcatcatcattcttccattg |
2280454 |
T |
|
| Q |
329 |
t |
329 |
Q |
| |
|
| |
|
|
| T |
2280453 |
t |
2280453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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