View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3757_high_1 (Length: 795)
Name: NF3757_high_1
Description: NF3757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3757_high_1 |
 | |
|
| [»] scaffold0870 (2 HSPs) |
| | |
|
| [»] scaffold0889 (2 HSPs) |
| | |
|
| [»] scaffold1029 (2 HSPs) |
| | |
|
| [»] scaffold1033 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 471; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 212 - 767
Target Start/End: Original strand, 24071637 - 24072191
Alignment:
| Q |
212 |
gcgcgtggagagggtacgtattaaacaaacctgcgtttacataatggcctccttgtctcagcaagcggaatgcaagtgcaacttgatagagttcatggct |
311 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24071637 |
gcgcgtggagagggtacgttttaaacatacctgcatttacataatggcctccttgtctgagcaagcggaatgcaagtgcaacttgatagagttcatggct |
24071736 |
T |
|
| Q |
312 |
actcataaaatcaataggattggtgttcaatatcaaatgcaagttttcaagagccactttgatctcgtcaacaaagtagtgttcaatgtcaaacttttgg |
411 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24071737 |
actcacaaaatcaataggattggtgttcaatatcaaatgcaagttttcaagagccgctttgatctcgtcaacaaagtagtgttcaatgtcaaacttttgg |
24071836 |
T |
|
| Q |
412 |
atgatatcgatcaaataaaaacactccatcggatcttcgattttaacaagtttgtcataaacttgcttaaatatcaaagcttgtttgacataagtaacat |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24071837 |
atgatatcgatcaaataaaaacactccatcggatcttcgattttaacaagtttctcataaacttgcttaaatatcaaagcttgtttgacataagtaacat |
24071936 |
T |
|
| Q |
512 |
cctgaaaatgtaaaagtgcatattgatcagaacattgaaatatga--atatattgtaaattcagaacatatgtatatctattatcatacgtaccattctg |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
24071937 |
cctgaaaatgtaaaagtgcatattgatcagaacattaaaatatgaatatatattgtaaattcagaacatatgtatatctattaaaatacttaccattctg |
24072036 |
T |
|
| Q |
610 |
gaaattaatgctttgatagtaaaacggacttgattcaatgtttatagttggagatattgttaagatgtgaagtggtttgctataacggtataactttgga |
709 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24072037 |
gaaattaatgctttgatagtaaaacagacttgattcaatgtttatagttggagatattgttaagatgtgaagtggtttgctataacggtataactttgga |
24072136 |
T |
|
| Q |
710 |
agatgattgattattttgaagtaatgggaaat-atatgtggagctatttataggattat |
767 |
Q |
| |
|
|| ||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
24072137 |
ag----ttgattattttgaagaaatgggaaatgatatgtggagctatttataggattat |
24072191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 24071388 - 24071572
Alignment:
| Q |
19 |
gttaagacgatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgtttttcttcaaacattcttttg |
118 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
24071388 |
gttaagatgatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgtgtttcttcaaacattcttttg |
24071487 |
T |
|
| Q |
119 |
ttacacttcaagctgtcaaataaatctacacaacaattatagttagtcactatattactaactaaatactcgcagtaatatatat |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
24071488 |
ttacacttcaagctgtcaaataaatctacacaacaattatagttagtcactacattactaactaaatactcccagtaatatatat |
24071572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 24079348 - 24079216
Alignment:
| Q |
19 |
gttaagacgatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgtttttcttcaaacattcttttg |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24079348 |
gttaagatgatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgtttttcttcaaacattcttttg |
24079249 |
T |
|
| Q |
119 |
ttacacttcaagctgtcaaataaatctacacaa |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
24079248 |
ttacacttcaagctgtcaaataaatctacacaa |
24079216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 19 - 680
Target Start/End: Original strand, 28579820 - 28580487
Alignment:
| Q |
19 |
gttaagacgatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgtttttcttcaaacattcttttg |
118 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||||||||| | ||| |||||||| || || || ||||||||||||| |||||||||||| |
|
|
| T |
28579820 |
gttaagactatcttctccttcaatacttagttgtgatgcttcgtaaagtgtaattagaccttttacttcttctccatgtttttctttcaacattcttttg |
28579919 |
T |
|
| Q |
119 |
ttacacttcaagctgtcaaataaatctacacaacaattatagttagtcactatattactaactaaatactcgcagtaatatatatctgtgcgtgcgcgtg |
218 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| | || || |
|
|
| T |
28579920 |
ttccacttcaagctgtcaaataaatctacacaacaattatagttagtcactatattactaactaaatactcctagtaaattatatattcaaatg----tg |
28580015 |
T |
|
| Q |
219 |
gagagggtacgtattaaacaaacctgcgtttacataatggcctccttgtctcagcaagcggaatgcaagtgcaacttgatagagttcatggctactcata |
318 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | | |
|
|
| T |
28580016 |
gagagggtacgtattaaactaacctgcatttacgtaatggcctccttgtctcagcaagcggaatgcaagtgcaacttcatagagttcatggctacttaca |
28580115 |
T |
|
| Q |
319 |
aaatcaataggattggtgttcaatatcaaatgcaagttttcaagagccactttgatctcgtcaacaaagtagtgttcaatgtcaaacttttggatgatat |
418 |
Q |
| |
|
||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||| || |||||||||||||||| ||||| ||||||| |||| |
|
|
| T |
28580116 |
aaatcaataggattgttgttcaatatcaaatgtagtttttcaagagccactttgatctcctcggtaaagtagtgttcaatgccaaacctttggataatat |
28580215 |
T |
|
| Q |
419 |
cgatcaaataaaaacactccatcggatcttcgattttaacaagtttgtcataaacttgcttaaatatcaaagcttgtttgacataagtaacatcctgaaa |
518 |
Q |
| |
|
| ||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
28580216 |
caatcaaataaaaactttccatcggatcttcgattttaacaagtttcttataaacttgcttgaatatcaaagcttgtttgacatatgtaacgtcctgaaa |
28580315 |
T |
|
| Q |
519 |
atgtaaaagtgcatattgatcagaacattgaaatatgaatatattgtaaattcagaacatatgtata----------tctattatcatacgtaccattct |
608 |
Q |
| |
|
||||||||||| | |||||||||||||||| |||| || ||||| |||||| |||||| |||||| || |||| |||| ||||||||| |
|
|
| T |
28580316 |
atgtaaaagtgtagattgatcagaacattgcaataaaaagatattctaaatttagaacaattgtatatatttgtacttcaattaaaatacttaccattct |
28580415 |
T |
|
| Q |
609 |
ggaaattaatgctttgatagtaaaacggacttgattcaatgtttatagttggagatattgttaagatgtgaa |
680 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||| ||||||||| ||| ||||||||||||||||||| |
|
|
| T |
28580416 |
ggaaattaatgctttgataataaaacagacttgattcagtgtttatagctggggatattgttaagatgtgaa |
28580487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 19 - 693
Target Start/End: Original strand, 26315822 - 26316504
Alignment:
| Q |
19 |
gttaagacgatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgtttttcttcaaacattcttttg |
118 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
26315822 |
gttaagactatcttctccttcaatacttagttgtgatgcttcgtaaagggcaacgagacctttcacatcctcgccatgtttttcttcgaacattcttttg |
26315921 |
T |
|
| Q |
119 |
ttacacttcaagctgtcaaataaatctacacaacaat--tatagttagtcactatattactaactaaa-tactcgcagtaatatatatctgtgcgtgcgc |
215 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||| |||| ||||| |||||| | || |
|
|
| T |
26315922 |
ttacacttcaagctgtcaaataaatctgcaaaacaatattatagttagtcactatattactaactaaaatacttatagtaaaatatatattcaaatg--- |
26316018 |
T |
|
| Q |
216 |
gtggagagggtacgtattaaacaaacctgcgtttacataatggcctccttgtctcagcaagcggaatgcaagtgcaacttgatagagttcatggctactc |
315 |
Q |
| |
|
||||||| ||| ||||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
26316019 |
-tggagagtgtaagtattaaactaacctgcatttacataatgtcctccttgtctgagcaagcggaatgcaagtgcaacttcgtagagttcatggatactc |
26316117 |
T |
|
| Q |
316 |
ataaaatcaataggattggtgttcaatatcaaatgcaagttttcaagagccactttgatctcgtcaacaaagtagtgttcaatgtcaaacttttggatga |
415 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||| | || |||||||||||||||||||| |||||||||||||||||||||| || | ||||||||| |
|
|
| T |
26316118 |
ataaaatcattaggattggtgttcaatatcgaatatagcttctcaagagccactttgatctcttcaacaaagtagtgttcaatgttaagcctttggatga |
26316217 |
T |
|
| Q |
416 |
tatcgatcaaataaaaacactccatcggatcttcgattttaacaagtttgtcataaacttgcttaaatatcaaagcttgtttgacataagtaacatcctg |
515 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26316218 |
tatcgatcaaataaaaactctccatcggatattcgattttaacaagtttcttataaacttgcttaaatatcaaagcttgtttgacatatgtaacatcctg |
26316317 |
T |
|
| Q |
516 |
aaaatgtaaaagtgcatattgatcagaacattgaaatatgaatatattgtaaattcagaac----------atatgtatatctattatcatacgtaccat |
605 |
Q |
| |
|
|||||||||||||||| | |||| |||||||||||||| |||||||||||||| ||||| || |||| || |||| |||| |||||| |
|
|
| T |
26316318 |
aaaatgtaaaagtgcagaatgatgagaacattgaaata-aaatatattgtaaatctagaacaactttatatatttgtacttcaattaaaatacttaccat |
26316416 |
T |
|
| Q |
606 |
tctggaaattaatgctttgatagtaaaacggacttgattcaatgtttatagttggagatattgttaagatgtgaagtggtttgctata |
693 |
Q |
| |
|
||| ||||||||| |||||||||||||| |||||||||| ||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26316417 |
tctataaattaatgatttgatagtaaaacaaacttgattcagtgtttatggttgaggatattgttaagatgtgaagtggtttgctata |
26316504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 693
Target Start/End: Original strand, 28585967 - 28586644
Alignment:
| Q |
19 |
gttaagacgatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgtttttcttcaaacattcttttg |
118 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||| ||||||||||||| |||||||||||| |
|
|
| T |
28585967 |
gttaagactatcttctccttcaatacttagttgtgatgcttcgtaaagagcaataagacctttgacatcctcgccatgtttttctttcaacattcttttg |
28586066 |
T |
|
| Q |
119 |
ttacacttcaagctgtcaaataaatctacacaacaattatagttagtcactatattactaactaaatactcgca--gtaatat-atatctgtgcgtgcgc |
215 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||| || |||| | | | | | |
|
|
| T |
28586067 |
ttccacttcaagctgtcaaataaatctacacaacaattatagttggtcactatattactaactaaatactcctatagtaaaattatatatatacagacac |
28586166 |
T |
|
| Q |
216 |
gtg---gagagggtacgtattaaacaaacctgcgtttacataatggcctccttgtctcagcaagcggaatgcaagtgcaacttgatagagttcatggcta |
312 |
Q |
| |
|
|||| |||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
28586167 |
acacacgagaaggtacgcattaaacaaacctgcatttacgtaatggcctccttgtctcagcaagcggaatgcaagtgcaacttcatagatttcatggcta |
28586266 |
T |
|
| Q |
313 |
ctcataaaatcaataggattggtgttcaatatcaaatgcaagttttcaagagccactttgatctcgtcaacaaagtagtgttcaatgtcaaacttttgga |
412 |
Q |
| |
|
||| ||||||||| | ||||||||||||| ||||||| | ||||||||||||||||||||||| ||| |||| |||||||||||| ||||| |||||| |
|
|
| T |
28586267 |
ctcgcaaaatcaattgaattggtgttcaatgtcaaatgtagcttttcaagagccactttgatctcctcagcaaaatagtgttcaatgccaaacctttgga |
28586366 |
T |
|
| Q |
413 |
tgatatcgatcaaataaaaacactccatcggatcttcgattttaacaagtttgtcataaacttgcttaaatatcaaagcttgtttgacataagtaacatc |
512 |
Q |
| |
|
| ||||||||||||||||||| |||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28586367 |
taatatcgatcaaataaaaactttccatcggatcttcaattttaacaagtttcttataaacttgcttaaatatcaaagcttgtttgacatatgtaacatc |
28586466 |
T |
|
| Q |
513 |
ctgaaaatgtaaaagtgcatattgatcagaacattgaaatatgaatatattgtaaattcagaacatatgtatatctattatcatacgtaccattctggaa |
612 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||| |||| ||| || ||| |||| | |||| ||| ||||||||||||| |
|
|
| T |
28586467 |
ctgaaaatgtaaaagtgcagattgatcagaatattgaaataaaaatacatt---tctttgatacaactgtactccaattaaattacttaccattctggaa |
28586563 |
T |
|
| Q |
613 |
attaatgctttgatagtaaaacggacttgattcaatgtttatagttggagatattgttaagatgtgaagtggtttgctata |
693 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||||| |||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
28586564 |
attaatgctttgatagtaaaacagacttgattcagtgtttataactggaaatattgtgaagatgtgaagtggtttgctata |
28586644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 553
Target Start/End: Original strand, 28574768 - 28575297
Alignment:
| Q |
19 |
gttaagacgatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgtttttcttcaaacattcttttg |
118 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28574768 |
gttaagactatcttctccgtcaatacttagttgtgatgcttcgtaaagggcaatgaggcctttcaaatcctcaccatgtttttcttcaaacattcttttg |
28574867 |
T |
|
| Q |
119 |
ttacacttcaagctgtcaaataaatctacacaacaattatagttagtcactatattactaactaaatactcgcagtaatatatatctgtgcgtgcgcgtg |
218 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | || || | | ||| || |
|
|
| T |
28574868 |
ttgcacttcaagctgtcaaataaatctacacaacaattatagttagtcactatattactaa----atactccta-tagtaaaattatgtattcaaatgta |
28574962 |
T |
|
| Q |
219 |
gagagggtacgtattaaacaaacctgcgtttacataatggcctccttgtctcagcaagcggaatgcaagtgcaacttgatagagttcatggctactcata |
318 |
Q |
| |
|
||||||||||| ||||||| ||||||| || ||||| |||||||||||||||||||||||||||||||||| || || |||||||||||||||| ||| | |
|
|
| T |
28574963 |
gagagggtacgaattaaactaacctgcattgacatagtggcctccttgtctcagcaagcggaatgcaagtgaaaattcatagagttcatggctattcaca |
28575062 |
T |
|
| Q |
319 |
aaatcaataggattggtgttcaatatcaaatgcaagttttcaagagccactttgatctcgtcaacaaagtagtgttcaatgtcaaacttttggatgatat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||| |||| |||||||||||| ||||| |||||||||||| |
|
|
| T |
28575063 |
aaatcaataggattggtgttcaatatcaaatgtagcttttcaagagccactttgatctcctcagcaaaatagtgttcaatgccaaacctttggatgatat |
28575162 |
T |
|
| Q |
419 |
cgatcaaataaaaacactccatcggatcttcgattttaacaagtttgtcataaacttgcttaaatatcaaagcttgtttgacataagtaacatcctgaaa |
518 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||| || ||||| |||||||||||||| |
|
|
| T |
28575163 |
cgatcaaataaaaactctccatcgaatcttcgattttaacaagtttcttataaacttgcttaaatatcaaagcttgcttaacatatgtaacatcctgaaa |
28575262 |
T |
|
| Q |
519 |
atgtaaaagtgcatattgatcagaacattgaaata |
553 |
Q |
| |
|
| || |||||||| ||||||||||||||||||||| |
|
|
| T |
28575263 |
aagtcaaagtgcagattgatcagaacattgaaata |
28575297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 229 - 553
Target Start/End: Original strand, 28568130 - 28568457
Alignment:
| Q |
229 |
gtattaaacaaacctgcgtttacataatggcctccttgtctcagcaagcggaatgcaagtgcaacttgatagagttcatggctactcataaaatcaat-- |
326 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
28568130 |
gtattaaacaaacctgcatttacgtaatggcctccttgtctcagcaagcggaatgcaagtgcaacttcatagagttcatggctactcacaaaatcaatta |
28568229 |
T |
|
| Q |
327 |
-aggattggtgttcaatatcaaatgcaagttttcaagagccactttgatctcgtcaacaaagtagtgttcaatgtcaaacttttggatgatatcgatcaa |
425 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| || || ||| |||| ||||| ||||| ||||| ||||||| ||||| ||||| |
|
|
| T |
28568230 |
taggattggtgttcaatatcaaatgcagattttcaagagccacttttatttcctcagcaaaatagtgctcaataccaaacctttggataatatccatcaa |
28568329 |
T |
|
| Q |
426 |
ataaaaacactccatcggatcttcgattttaacaagtttgtcataaacttgcttaaatatcaaagcttgtttgacataagtaacatcctgaaaatgtaaa |
525 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||| |||||||| ||| ||||| |
|
|
| T |
28568330 |
ataaaaactctccatcggatcttcgattttaacaagtttcttataaacttgcttaaatattaaagcttgtttgacatatacaacatcctaaaattgtaag |
28568429 |
T |
|
| Q |
526 |
agtgcatattgatcagaacattgaaata |
553 |
Q |
| |
|
|||||| ||||||||||| ||||||||| |
|
|
| T |
28568430 |
agtgcagattgatcagaatattgaaata |
28568457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 28567940 - 28568100
Alignment:
| Q |
19 |
gttaagacgatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgtttttcttcaaacattcttttg |
118 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28567940 |
gttaagactatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgtttttcttcaaacattcttttg |
28568039 |
T |
|
| Q |
119 |
ttacacttcaagctgtcaaataaatctacacaacaattatagttagtcactatattactaa |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
28568040 |
ttacacttcaagctgtcaaataaatctacacaacaattatagttagtcattttattactaa |
28568100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 239 - 553
Target Start/End: Original strand, 20618387 - 20618700
Alignment:
| Q |
239 |
aacctgcgtttacataatggcctccttgtctcagcaagcggaatgcaagtgcaacttgatagagttcatggctactcataaaatcaataggattggtgtt |
338 |
Q |
| |
|
||||||| || ||||||| |||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||| | ||||||||| |||||| || | |
|
|
| T |
20618387 |
aacctgcattgacataatagcctccttgtctgagcaaacggaatgcaagtgcaacttcatagagttcatggctactaacaaaatcaattggattgctgct |
20618486 |
T |
|
| Q |
339 |
caatatcaaatgcaagttttcaagagccactttgatctcgtcaacaaagtagtgttcaatgtcaaacttttggatgatatcgatcaaataaaaacactcc |
438 |
Q |
| |
|
|||||||||| || ||||||||||||||||| || |||||||||||||||||||| ||| | |||||||||| || ||||||| |||| ||| |
|
|
| T |
20618487 |
caatatcaaaaattgtttctcaagagccactttgatttcctcaacaaagtagtgttcaataccaagcctttggatgatgtcaatcaaatgaaaattctca |
20618586 |
T |
|
| Q |
439 |
atcggatcttcgattttaacaagtttgtcataaacttgcttaaatatcaaagcttgtttgacataagtaacatcctgaaaatgtaaaagtgcatattgat |
538 |
Q |
| |
|
| |||||||| | |||||||||| | | |||||||||| | ||||||||||| ||||||||| || ||||||||||||||| || | |||||||| |
|
|
| T |
20618587 |
gttggatcttcactagtaacaagtttcttgtgaacttgcttacacatcaaagcttgcttgacataaatagcatcctgaaaatgtagaacag-atattgat |
20618685 |
T |
|
| Q |
539 |
cagaacattgaaata |
553 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
20618686 |
cataacattgaaata |
20618700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 23 - 141
Target Start/End: Original strand, 20617136 - 20617254
Alignment:
| Q |
23 |
agacgatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgtttttct-tcaaacattcttttgtta |
121 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||| || | ||||||||||||||||||||||||||||| |||| || |||| ||| ||||| || |
|
|
| T |
20617136 |
agaccatcttctccttcaatacttagttgggatgcttcatacaaggcaatgagacctttcacatcctcaccatattttactctcaatgatt-ttttgcta |
20617234 |
T |
|
| Q |
122 |
cacttcaagctgtcaaataa |
141 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
20617235 |
cacttcaagcagtcaaataa |
20617254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 595 - 676
Target Start/End: Original strand, 28575353 - 28575432
Alignment:
| Q |
595 |
atacgtaccattctggaaattaatgctttgatagtaaaacggacttgattcaatgtttatagttggagatattgttaagatg |
676 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||| |||||| |||||||||| ||||||||| ||| | |||||||||||| |
|
|
| T |
28575353 |
atacttaccattctagaaattaatgctttgataataaaacagacttgattcggtgtttatagctgggg--attgttaagatg |
28575432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 595 - 632
Target Start/End: Original strand, 28568517 - 28568554
Alignment:
| Q |
595 |
atacgtaccattctggaaattaatgctttgatagtaaa |
632 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
28568517 |
atacttaccattctagaaattaatgctttgatagtaaa |
28568554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0870 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: scaffold0870
Description:
Target: scaffold0870; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 229 - 552
Target Start/End: Complemental strand, 4959 - 4635
Alignment:
| Q |
229 |
gtattaaacaaacctgcgtttacataatggcctccttgtctcagcaagcggaatgcaagtgcaacttgatagagttcatggctactcataaaatcaat-- |
326 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
4959 |
gtattaaacaaacctgcatttacgtaatggcctccttgtctcagcaagcggaatgcaagtgcaacttcatagagttcatggctactcacaaaatcaatta |
4860 |
T |
|
| Q |
327 |
-aggattggtgttcaatatcaaatgcaagttttcaagagccactttgatctcgtcaacaaagtagtgttcaatgtcaaacttttggatgatatcgatcaa |
425 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| || || || ||| |||| ||||||||||| ||||| ||||||| ||||||||||| |
|
|
| T |
4859 |
taggattggtgttcaatatcaaatgcagattttcaagagccacatttatttcctcagcaaaatagtgttcaataccaaacctttggataatatcgatcaa |
4760 |
T |
|
| Q |
426 |
ataaaaacactccatcggatcttcgattttaacaagtttgtcataaacttgcttaaatatcaaagcttgtttgacataagtaacatcctgaaaatgtaaa |
525 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
4759 |
ataaaaactctccatgggatcttcgattttaacaagtttcttataaactttcttaaatatcaaagcttgtttgacatataaaacatcctaaaaatgtaaa |
4660 |
T |
|
| Q |
526 |
agtgcatattgatcagaacattgaaat |
552 |
Q |
| |
|
||||| |||||||||||||||||||| |
|
|
| T |
4659 |
agtgc--attgatcagaacattgaaat |
4635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0870; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 662 - 761
Target Start/End: Complemental strand, 4560 - 4464
Alignment:
| Q |
662 |
gatattgttaagatgtgaagtggtttgctataacggtataact-ttggaagatgattgattattttgaagtaatgggaaatatatgtggagctatttata |
760 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| | |||||||| |||||| |||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
4560 |
gatatttttaagatgtgaagtggtttgctatagcagtataactcaaggaaga----tgattattttgaagaaatgggaataatatgtggagctatttata |
4465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0889 (Bit Score: 188; Significance: 1e-101; HSPs: 2)
Name: scaffold0889
Description:
Target: scaffold0889; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 247 - 552
Target Start/End: Complemental strand, 4737 - 4431
Alignment:
| Q |
247 |
tttacataatggcctccttgtctcagcaagcggaatgcaagtgcaacttgatagagttcatggctactcataaaatcaat---aggattggtgttcaata |
343 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
4737 |
tttacgtaatggcctccttgtctcagcaagcggaatgcaagtgcaacttcatagagttcatggctactcacaaaatcaattataggattggtgttcaata |
4638 |
T |
|
| Q |
344 |
tcaaatgcaagttttcaagagccactttgatctcgtcaacaaagtagtgttcaatgtcaaacttttggatgatatcgatcaaataaaaacactccatcgg |
443 |
Q |
| |
|
||||||||| |||||||||||||| || || || ||| |||| ||||||||||| ||||| ||||||| ||||||||||||||||||| |||||| || |
|
|
| T |
4637 |
tcaaatgcagattttcaagagccacatttatttcctcagcaaaatagtgttcaataccaaacctttggataatatcgatcaaataaaaactctccatggg |
4538 |
T |
|
| Q |
444 |
atcttcgattttaacaagtttgtcataaacttgcttaaatatcaaagcttgtttgacataagtaacatcctgaaaatgtaaaagtgcatattgatcagaa |
543 |
Q |
| |
|
||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
4537 |
atcttcgattttaacaagtttcttataaactttcttaaatatcaaagcttgtttgacatataaaacatcctaaaaatgtaaaagtgc--attgatcagaa |
4440 |
T |
|
| Q |
544 |
cattgaaat |
552 |
Q |
| |
|
||||||||| |
|
|
| T |
4439 |
cattgaaat |
4431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0889; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 662 - 761
Target Start/End: Complemental strand, 4356 - 4260
Alignment:
| Q |
662 |
gatattgttaagatgtgaagtggtttgctataacggtataact-ttggaagatgattgattattttgaagtaatgggaaatatatgtggagctatttata |
760 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| | |||||||| |||||| |||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
4356 |
gatatttttaagatgtgaagtggtttgctatagcagtataactcaaggaaga----tgattattttgaagaaatgggaataatatgtggagctatttata |
4261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029 (Bit Score: 132; Significance: 4e-68; HSPs: 2)
Name: scaffold1029
Description:
Target: scaffold1029; HSP #1
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 384 - 681
Target Start/End: Complemental strand, 3328 - 3020
Alignment:
| Q |
384 |
aaagtagtgttcaatgtcaaacttttggatgatatcgatcaaataaaaacactccatcggatcttcgattttaacaagtttgtcataaacttgcttaaat |
483 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
3328 |
aaagtagtgttcaatgccaaacctttggataatatcaatcaaataaaaactttccatcggatcttcgattttaacaagtttcttataaacttgcttaaat |
3229 |
T |
|
| Q |
484 |
atcaaagcttgtttgacataagtaacatcctgaaaatgtaaaagtgcatattgatcagaacattgaaatatgaatatattgtaaattcagaacatatgta |
583 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||| || ||||||| || ||||| |||||| ||||| |||| |
|
|
| T |
3228 |
atcaaagcttgtttgacatatgtagcatcctgaaaatgtaaaagtgcagattgatcagtactttgaaat---aaaatattttaaatt-tgaacagctgta |
3133 |
T |
|
| Q |
584 |
ta----------tctattatcatacgtaccattctggaaattaatgctttgatag-----taaaacggacttgattcaatgtttatagttggagatattg |
668 |
Q |
| |
|
|| || |||| |||| ||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||| ||| ||||||| |
|
|
| T |
3132 |
tatatttgtacttcaattaaaatacttaccattctggaaattaatgctttgatagtaaattaaaacagacttgattcagtgtttatagctggggatattg |
3033 |
T |
|
| Q |
669 |
ttaagatgtgaag |
681 |
Q |
| |
|
||||||||||||| |
|
|
| T |
3032 |
ttaagatgtgaag |
3020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 717 - 761
Target Start/End: Complemental strand, 3018 - 2974
Alignment:
| Q |
717 |
tgattattttgaagtaatgggaaatatatgtggagctatttatag |
761 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
3018 |
tgattattttgaagaaatgggaatgatatgtggagctatttatag |
2974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033 (Bit Score: 98; Significance: 7e-48; HSPs: 2)
Name: scaffold1033
Description:
Target: scaffold1033; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 442 - 681
Target Start/End: Complemental strand, 3270 - 3020
Alignment:
| Q |
442 |
ggatcttcgattttaacaagtttgtcataaacttgcttaaatatcaaagcttgtttgacataagtaacatcctgaaaatgtaaaagtgcatattgatcag |
541 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
3270 |
ggatcttcgattttaacaagtttcttataaacttgcttaaatatcaaagcttgtttgacatatgtagcatcctgaaaatgtaaaagtgcagattgatcag |
3171 |
T |
|
| Q |
542 |
aacattgaaatatgaatatattgtaaattcagaacatatgtata----------tctattatcatacgtaccattctggaaattaatgctttgatag--- |
628 |
Q |
| |
|
|| ||||||| || ||||| |||||| ||||| |||||| || |||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
3170 |
tactttgaaat---aaaatattttaaatt-tgaacagctgtatatatttgtacttcaattaaaatacttaccattctggaaattaatgctttgatagtaa |
3075 |
T |
|
| Q |
629 |
--taaaacggacttgattcaatgtttatagttggagatattgttaagatgtgaag |
681 |
Q |
| |
|
|||||| ||||||||||| ||||||||| ||| |||||||||||||||||||| |
|
|
| T |
3074 |
attaaaacagacttgattcagtgtttatagctggggatattgttaagatgtgaag |
3020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 717 - 761
Target Start/End: Complemental strand, 3018 - 2974
Alignment:
| Q |
717 |
tgattattttgaagtaatgggaaatatatgtggagctatttatag |
761 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
3018 |
tgattattttgaagaaatgggaatgatatgtggagctatttatag |
2974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 9e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 601 - 693
Target Start/End: Complemental strand, 34812992 - 34812900
Alignment:
| Q |
601 |
accattctggaaattaatgctttgatagtaaaacggacttgattcaatgtttatagttggagatattgttaagatgtgaagtggtttgctata |
693 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||| |||||||||| ||||||||| |||||||||| |||||||||||||| |||||||||| |
|
|
| T |
34812992 |
accattctgaaaattaatgctttgataataaaacagacttgattcggtgtttataggtggagatatttttaagatgtgaagtagtttgctata |
34812900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 601 - 693
Target Start/End: Original strand, 5892872 - 5892964
Alignment:
| Q |
601 |
accattctggaaattaatgctttgatagtaaaacggacttgattcaatgtttatagttggagatattgttaagatgtgaagtggtttgctata |
693 |
Q |
| |
|
||||||||| |||||| |||| ||||| |||||| ||||||||| ||||||||| |||| ||||| |||||||||||||| |||||||||| |
|
|
| T |
5892872 |
accattctgaaaattagtgctctgataataaaacagacttgatttggtgtttataggtggaaatatttttaagatgtgaagtagtttgctata |
5892964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 717 - 759
Target Start/End: Original strand, 5892999 - 5893041
Alignment:
| Q |
717 |
tgattattttgaagtaatgggaaatatatgtggagctatttat |
759 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
5892999 |
tgattattttgaagaaatgggaatgatatgtggagctatttat |
5893041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 250 - 312
Target Start/End: Complemental strand, 2600881 - 2600819
Alignment:
| Q |
250 |
acataatggcctccttgtctcagcaagcggaatgcaagtgcaacttgatagagttcatggcta |
312 |
Q |
| |
|
||||| |||||||||||||| |||||||| |||| ||| ||||||| || ||||||||||||| |
|
|
| T |
2600881 |
acatagtggcctccttgtcttagcaagcgaaatgtaagcgcaacttcatggagttcatggcta |
2600819 |
T |
|
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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 145
Target Start/End: Complemental strand, 2601542 - 2601425
Alignment:
| Q |
28 |
atcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgtttttcttcaaacattcttttgttacacttc |
127 |
Q |
| |
|
||||||||| ||||||||||| || || ||||| || | |||||||||| ||||||||||||||| |||||| ||| |||| |||||| || || |
|
|
| T |
2601542 |
atcttctccctcaatacttagctgggaggcttcatacatagcaatgagactcttcacatcctcaccaaatttttcactaaaatttctcttgttaaacatc |
2601443 |
T |
|
| Q |
128 |
aagctgtcaaataaatct |
145 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
2601442 |
aagctgtcaaatatatct |
2601425 |
T |
|
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