View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3757_high_4 (Length: 529)
Name: NF3757_high_4
Description: NF3757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3757_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Complemental strand, 1266232 - 1265725
Alignment:
| Q |
1 |
gaggaagaaggcgaccaacaatgtcatggcttatagttttcatgtcttgtgaggttgatttggaaacaagggaagccatgtcgaggatgttcccggtgaa |
100 |
Q |
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| T |
1266232 |
gaggaagaaggcgaccgacaatgtcatggcttatagttttcatgtcttgtgaggttgatttggaaacaagggaagccatgtcgaggatgttcccggtgaa |
1266133 |
T |
|
| Q |
101 |
gaagctaggtctcgggccccgaacaccttgcatctccatgattttcttgatgcgtagtggagtgaggaagtaacatgataggttttcatacaagagttta |
200 |
Q |
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| T |
1266132 |
gaagctaggtctcgggccccgaacaccttgcatctccatgattttcttgatgcgcagtggagtgaggaagtaacatgataggttttcatacaagagttta |
1266033 |
T |
|
| Q |
201 |
aatagaaaagtcactagtatgaacaaaagtatattaagaaccaccatcatggagatgannnnnnnnnnnnngtggtgctaatatatattttgggatgatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
1266032 |
aatagaaaagtcactagtatgaacaaaagtatattaagaaccaccatcatggagatga---ttttttttttgtggtgccaatatatattttgggatgatg |
1265936 |
T |
|
| Q |
301 |
agaagtgaatttgagattataggaagttagagtattgatatgagatgggaatatgatgtgtgactcaacttatatagtgggaatttgatctgtgactatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1265935 |
agaagtgaatttgagattataggaagttagagtagtgatatgagatgggaatatgatgtgtgactcaacttatatagtgggaatttgatctgtgactatt |
1265836 |
T |
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| Q |
401 |
acttcatttttatatacacacactgtggctgagttgagttattaaattttgtttagtggttttgagaaagtgtttgtgattcatcattactcattgcttt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
1265835 |
ccttcatttttatatacacacactgtggctgagttgagttattaaattttgtttagtggttttaagaaagtgtttgtgattcatcattactcatagcttt |
1265736 |
T |
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| Q |
501 |
gaagacaaagg |
511 |
Q |
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| T |
1265735 |
gaagacaaagg |
1265725 |
T |
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