View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3757_high_5 (Length: 496)
Name: NF3757_high_5
Description: NF3757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3757_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 16 - 486
Target Start/End: Complemental strand, 32189933 - 32189463
Alignment:
| Q |
16 |
caacaaaaattgtacctcgatcgaaaattgtaatcatcatcgtcaaccaaggcttcaaggtaggaattagagccaccaacgatgatcggaagatttccac |
115 |
Q |
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| T |
32189933 |
caacaaaaattgtacctcgatcgaaaattgtaatcatcatcgtcaactaaggcttcaaggtaggaattagagccaccaacgatgatcggaagatttccac |
32189834 |
T |
|
| Q |
116 |
cgctcatgattaaatcaatcactgaagttgatttttcgcgaaaatcattggatgtgaactctatgttggggttatgtgttcctaataaatggtgtggtat |
215 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32189833 |
cgctcatgattaaatcaatcgctgaagttgatttttcgcgaaaatcattggatgtgaactctatgttggggttatgtgttcctaataaatggtgtggtat |
32189734 |
T |
|
| Q |
216 |
tcctttttgttcttctagagtgattttgtttgttactatgtccaaaccttcgtagatttgaattttgtctgagttgatgatttctgacgggaaataattg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32189733 |
tcctttttgttcttctagagtgattttgtttgttactatgtccaaaccttcgtagatttgaattttgtctgagttgatgatttctgacgggaaataattg |
32189634 |
T |
|
| Q |
316 |
gctaagtcaattgaaagctttgactttcctgttcctgttgcgcccatcaccaacactacattttctttttgaatttgtctcatattcagttttttgccac |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32189633 |
gctaagtcaattgaaagctttgactttcctgttcctgttgcgcccatcaccaacactacattttctttttgaatttgtctcatattcagttttttgccac |
32189534 |
T |
|
| Q |
416 |
tgcattgaacattgcttgttaagggttgtctaattagtctgcacatggacaatgagatgctcatgatgatg |
486 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32189533 |
tgcattgaacattgcttgttaagggttgtctaattagtctgcacatggacaatgagatgctcatgatgatg |
32189463 |
T |
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