View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3757_low_12 (Length: 229)
Name: NF3757_low_12
Description: NF3757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3757_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 14625488 - 14625679
Alignment:
| Q |
20 |
acaattctcggcaacctcacccaacaaatcctcttccacaacttaaaccctttttctcttcacctttcccttctaaaaacaacaaacacacacaaccttt |
119 |
Q |
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| T |
14625488 |
acaattctcggcaacctcacccaacaaatcctcttccacaacttaaaccctttttctcttcacctttcccttctaaaaacaacaaacacacacaaccttt |
14625587 |
T |
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| Q |
120 |
gtttctattgtttcacctctgacaattctaaatccagattccaacccaacatcattgtcatcttctttccttccttccacggtggctggtcc |
211 |
Q |
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| T |
14625588 |
gtttctattgtttcacctctgacaattctaaatccagattccgacccaacatcattgtcatcttctttccttccttccacggtggctggtcc |
14625679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 63 - 177
Target Start/End: Complemental strand, 18107055 - 18106940
Alignment:
| Q |
63 |
taaaccctttttctcttcacctttcccttctaaaaacaacaaacacacac-aacctttgtttctattgtttcacctctgacaattctaaatccagattcc |
161 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||| ||||||| |||| |||||| | |
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| T |
18107055 |
taaaccctttttctcttcacctttcccttctaaaaacaacaaacacacccaaacctttcattctattgtttcacctgcgacaattttaaagacagatttc |
18106956 |
T |
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| Q |
162 |
aacccaacatcattgt |
177 |
Q |
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| T |
18106955 |
gacccaacatcattgt |
18106940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 136
Target Start/End: Original strand, 35301219 - 35301293
Alignment:
| Q |
63 |
taaaccctttttctcttcacctttcccttctaaaaacaacaaacacacac-aacctttgtttctattgtttcacc |
136 |
Q |
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|||||||||||| ||||||||||||||||||||||| ||||||||| ||| |||||||||||||| || |||||| |
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| T |
35301219 |
taaaccctttttttcttcacctttcccttctaaaaataacaaacactcacaaacctttgtttctactgcttcacc |
35301293 |
T |
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