View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3757_low_13 (Length: 220)

Name: NF3757_low_13
Description: NF3757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3757_low_13
NF3757_low_13
[»] chr3 (9 HSPs)
chr3 (19-145)||(19477570-19477696)
chr3 (35-142)||(26630912-26631019)
chr3 (19-142)||(27380158-27380281)
chr3 (139-199)||(27379932-27379992)
chr3 (19-142)||(28085223-28085343)
chr3 (155-203)||(19483117-19483165)
chr3 (81-131)||(27350327-27350377)
chr3 (139-184)||(28005894-28005939)
chr3 (139-191)||(27980380-27980432)
[»] scaffold1142 (2 HSPs)
scaffold1142 (19-142)||(2231-2354)
scaffold1142 (139-201)||(2005-2067)
[»] scaffold0043 (5 HSPs)
scaffold0043 (81-131)||(51311-51361)
scaffold0043 (81-125)||(30671-30715)
scaffold0043 (81-125)||(45529-45573)
scaffold0043 (153-203)||(30424-30474)
scaffold0043 (153-203)||(45282-45332)


Alignment Details
Target: chr3 (Bit Score: 107; Significance: 8e-54; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 19477696 - 19477570
Alignment:
Q  19 gatgaatccatcaagctcttcaattcttgaagtaaaattcgaatggaggaaattgagacttgtccagtaagaagcttttcaaatgcaagaagtgggtctt 118  Q
    |||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19477696 gatgaatccatcaagctcttcaattcctgaagtcaaaatcgaatggaggaaattgagacttgtccagtaagaagcttttcaaatgcaagaagtgggtctt 19477597  T
Q  119 cttcgatcagcttattaatttctttgg 145  Q
    ||||||||||||| ||||| |||||||    
T  19477596 cttcgatcagcttgttaatgtctttgg 19477570  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 35 - 142
Target Start/End: Complemental strand, 26631019 - 26630912
Alignment:
Q  35 tcttcaattcttgaagtaaaattcgaatggaggaaattgagacttgtccagtaagaagcttttcaaatgcaagaagtgggtcttcttcgatcagcttatt 134  Q
    ||||||||||||||||||||||| ||| |||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  26631019 tcttcaattcttgaagtaaaatttgaacggaggaaattggcacttgtccagtaagaagcttctcaaatgcaagaagtgggtcttcttcgatcagcttgtt 26630920  T
Q  135 aatttctt 142  Q
    ||| ||||    
T  26630919 aatatctt 26630912  T

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Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 27380281 - 27380158
Alignment:
Q  19 gatgaatccatcaagctcttcaattcttgaagtaaaattcgaatggaggaaattgagacttgtccagtaagaagcttttcaaatgcaagaagtgggtctt 118  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||| ||||| |||||||||||    
T  27380281 gatgagtccatcaaactcttcaattcttgaagtaaaattcgaatggagaaaattgagacttgtccaacaagaagcttttcaagtgcaaaaagtgggtctt 27380182  T
Q  119 cttcgatcagcttattaatttctt 142  Q
    |||  |||||||| ||||| ||||    
T  27380181 ctttaatcagcttgttaatgtctt 27380158  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 27379992 - 27379932
Alignment:
Q  139 tctttggtgggagtaggctttgtattgacaattgaaaaagagggtatgcatatattaccat 199  Q
    ||||||||||||| ||||| ||||||||||||||||| ||||||||||||||| |||||||    
T  27379992 tctttggtgggaggaggctctgtattgacaattgaaatagagggtatgcatattttaccat 27379932  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 28085343 - 28085223
Alignment:
Q  19 gatgaatccatcaagctcttcaattcttgaagtaaaattcgaatggaggaaattgagacttgtccagtaagaagcttttcaaatgcaagaagtgggtctt 118  Q
    ||||| ||||||||  |||||||||||||||||||| ||| ||||||  || ||   |||   |||||||||||||| |||||||||||||| ||||| |    
T  28085343 gatgagtccatcaaagtcttcaattcttgaagtaaagttctaatggaaaaactttgcact---ccagtaagaagcttctcaaatgcaagaagcgggtcct 28085247  T
Q  119 cttcgatcagcttattaatttctt 142  Q
    | |||||||| || ||||| ||||    
T  28085246 cctcgatcagtttgttaatgtctt 28085223  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 19483117 - 19483165
Alignment:
Q  155 gctttgtattgacaattgaaaaagagggtatgcatatattaccatcacc 203  Q
    |||||||||||||||||||| |||||||||||||| | || ||||||||    
T  19483117 gctttgtattgacaattgaagaagagggtatgcatgtttttccatcacc 19483165  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 131
Target Start/End: Complemental strand, 27350377 - 27350327
Alignment:
Q  81 tccagtaagaagcttttcaaatgcaagaagtgggtcttcttcgatcagctt 131  Q
    ||||||||||||||| | || ||||| |||||||||||| |||||||||||    
T  27350377 tccagtaagaagcttcttaagtgcaaaaagtgggtcttcctcgatcagctt 27350327  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 28005939 - 28005894
Alignment:
Q  139 tctttggtgggagtaggctttgtattgacaattgaaaaagagggta 184  Q
    |||||||||| || ||||||||||||||| |||||||| |||||||    
T  28005939 tctttggtggaagcaggctttgtattgacgattgaaaaggagggta 28005894  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 27980432 - 27980380
Alignment:
Q  139 tctttggtgggagtaggctttgtattgacaattgaaaaagagggtatgcatat 191  Q
    |||||||||| || ||||||||||  |||||||||||| ||||||| ||||||    
T  27980432 tctttggtggaagcaggctttgtaccgacaattgaaaaggagggtaggcatat 27980380  T

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Target: scaffold1142 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: scaffold1142
Description:

Target: scaffold1142; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 2354 - 2231
Alignment:
Q  19 gatgaatccatcaagctcttcaattcttgaagtaaaattcgaatggaggaaattgagacttgtccagtaagaagcttttcaaatgcaagaagtgggtctt 118  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  2354 gatgattccatcaaactcttcaattcttgaagtaaaattcgaatggaggaaattgagacttgtccaataagaagcttttcaaatgcaaaaagtgggtctt 2255  T
Q  119 cttcgatcagcttattaatttctt 142  Q
    ||||||||||||| ||||| ||||    
T  2254 cttcgatcagcttgttaatgtctt 2231  T

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Target: scaffold1142; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 2067 - 2005
Alignment:
Q  139 tctttggtgggagtaggctttgtattgacaattgaaaaagagggtatgcatatattaccatca 201  Q
    ||||||||||||| ||||| ||||||||||||||||| ||||||| ||||||| |||||||||    
T  2067 tctttggtgggaggaggctctgtattgacaattgaaatagagggtgtgcatattttaccatca 2005  T

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Target: scaffold0043 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 51311 - 51361
Alignment:
Q  81 tccagtaagaagcttttcaaatgcaagaagtgggtcttcttcgatcagctt 131  Q
    ||||||||||||||| |||| ||||| |||||||||||| |||||||||||    
T  51311 tccagtaagaagcttctcaagtgcaaaaagtgggtcttcctcgatcagctt 51361  T

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Target: scaffold0043; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 30715 - 30671
Alignment:
Q  81 tccagtaagaagcttttcaaatgcaagaagtgggtcttcttcgat 125  Q
    ||||||||||||||| |||| |||||||||||||||||| |||||    
T  30715 tccagtaagaagcttctcaagtgcaagaagtgggtcttcctcgat 30671  T

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Target: scaffold0043; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 45573 - 45529
Alignment:
Q  81 tccagtaagaagcttttcaaatgcaagaagtgggtcttcttcgat 125  Q
    ||||||||||||||| |||| |||||||||||||||||| |||||    
T  45573 tccagtaagaagcttctcaagtgcaagaagtgggtcttcctcgat 45529  T

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Target: scaffold0043; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 30474 - 30424
Alignment:
Q  153 aggctttgtattgacaattgaaaaagagggtatgcatatattaccatcacc 203  Q
    ||||||| |||||||| ||||| |||||||||||||||| || ||||||||    
T  30474 aggctttatattgacatttgaagaagagggtatgcatatttttccatcacc 30424  T

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Target: scaffold0043; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 45332 - 45282
Alignment:
Q  153 aggctttgtattgacaattgaaaaagagggtatgcatatattaccatcacc 203  Q
    ||||||| |||||||| ||||| |||||||||||||||| || ||||||||    
T  45332 aggctttatattgacatttgaagaagagggtatgcatatttttccatcacc 45282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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