View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3757_low_6 (Length: 429)
Name: NF3757_low_6
Description: NF3757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3757_low_6 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 30411088 - 30411516
Alignment:
| Q |
1 |
caaggcatcctcttcatctgtgcttctaacttcaaagactgagggtgagatactacaatgcaacaatttgaagtgtttcacattcaatgagctaaaaact |
100 |
Q |
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| T |
30411088 |
caaggcatcctcttcatctgtgcttctaacttcaaagactgagggtgagatattacaatgcaacaatttgaagtgtttcacattcaatgagctaaaaact |
30411187 |
T |
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| Q |
101 |
gctacgacgtactttcatccaagaagtcaagtggatgaacgtgggtttggtagtgtctttaaggggtggatcgatgagcacaagctagctcctactaaac |
200 |
Q |
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| T |
30411188 |
gctacgacgtactttcatccaagcggtcaagtggatgaacgtgggtttggtagtgtctttaaggggtggatcgatgagcacacgctagctcctactaaac |
30411287 |
T |
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| Q |
201 |
aaggtactggttatgttgttgctgttaagatgtttatcaaagaaagcagccaactgggacagaatgaatggttggtgagtgtcattttattatttcattt |
300 |
Q |
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| T |
30411288 |
aaggtactggttatgttgttgctgttaagatgtttatcaaagaaagcagccaactgggacagaatgaatggttggtgagtgtcattttattatttcattt |
30411387 |
T |
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| Q |
301 |
tgaagtttatgaaacttattttctttagcaaattaaatagattatgacagatgagaattctgatgagactaattaaaccttatattttaggcagaaatca |
400 |
Q |
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| T |
30411388 |
tgaagtttatgaaacttattttctttagcaaattaaatagattatgacagatgagaattctgatgagactaattaaaccttatattttaggcagaaatca |
30411487 |
T |
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| Q |
401 |
attatcttgggcagctgcatcatcctaat |
429 |
Q |
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| T |
30411488 |
attatcttgggcagctgcatcatcctaat |
30411516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 30408164 - 30408443
Alignment:
| Q |
1 |
caaggcatcctcttcatctgtgcttctaacttcaaagactgagggtgagatactacaatgcaacaatttgaagtgtttcacattcaatgagctaaaaact |
100 |
Q |
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| T |
30408164 |
caaggtatcctcttcaactgttctgctaacttcaaggactgagggtgagatattacaatccaacaatttgaagtgtttcacattcaatgaggtaaaaact |
30408263 |
T |
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| Q |
101 |
gctacgacgtactttcatccaagaagtcaagtggatgaacgtgggtttggtagtgtctttaaggggtggatcgatgagcacaagctagctcctactaaac |
200 |
Q |
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| T |
30408264 |
gcgacaagaaactttcatccaagtggtgaactcgatgaacgtggatttggtagggtattcaaggggtggatcgatgagcacatgcaagctcctacgaaac |
30408363 |
T |
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| Q |
201 |
aaggtactggttatgttgttgctgttaagatgtttatcaaagaaagcagccaactgggacagaatgaatggttggtgagtgtc |
283 |
Q |
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| T |
30408364 |
caggtactggttttgttgttgctgtgatgatgtttaacaatgaaagcaacca---ggaacatagtgaatggttggtgagtgtc |
30408443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 11 - 289
Target Start/End: Original strand, 30421212 - 30421487
Alignment:
| Q |
11 |
tcttcatctgtgcttctaacttcaaagactgagggtgagatactacaatgcaacaatttgaagtgtttcacattcaatgagctaaaaactgctacgacgt |
110 |
Q |
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| T |
30421212 |
tcttcatctgtgcttctaagctctaggaccgagggtgagatattgcaatcaaactatttgaagtgtttcactatcaatgaggtaagagccgcgacaagga |
30421311 |
T |
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| Q |
111 |
actttcatccaagaagtcaagtggatgaacgtgggtttggtagtgtctttaaggggtggatcgatgagcacaagctagctcctactaaacaaggtactgg |
210 |
Q |
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| T |
30421312 |
actttcgtccagatagtatgattggcgaaggtggatttggttgtgtatttaagggttggatcgatgagcacacactagctcctactaaaccaggtactgg |
30421411 |
T |
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| Q |
211 |
ttatgttgttgctgttaagatgtttatcaaagaaagcagccaactgggacagaatgaatggttggtgagtgtcatttta |
289 |
Q |
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| T |
30421412 |
ttttgttattgctgtcaagaggcttaaccaagaaagcagtca---gggacatagtgaatggttggtgagtctcatttta |
30421487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 361 - 429
Target Start/End: Original strand, 30408549 - 30408617
Alignment:
| Q |
361 |
tgatgagactaattaaaccttatattttaggcagaaatcaattatcttgggcagctgcatcatcctaat |
429 |
Q |
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| T |
30408549 |
tgatgagaataattaaaccttgtacttcaggcaaaaatcaattaccttgggcagctgcgtcatcctaat |
30408617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 141 - 212
Target Start/End: Original strand, 30404484 - 30404555
Alignment:
| Q |
141 |
gtgggtttggtagtgtctttaaggggtggatcgatgagcacaagctagctcctactaaacaaggtactggtt |
212 |
Q |
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| T |
30404484 |
gtggatttggttgtgtatttaagggttggatcgatgagcacacactagccccgactaaacaaggtactggtt |
30404555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 81
Target Start/End: Original strand, 30404352 - 30404424
Alignment:
| Q |
9 |
cctcttcatctgtgcttctaacttcaaagactgagggtgagatactacaatgcaacaatttgaagtgtttcac |
81 |
Q |
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| T |
30404352 |
cctcttcatttgtgcctctaacttctaggactgaggatgaggtattgcgatccaacaatttgacgtgtttcac |
30404424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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