View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3758_high_2 (Length: 405)
Name: NF3758_high_2
Description: NF3758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3758_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 31 - 394
Target Start/End: Complemental strand, 45988171 - 45987808
Alignment:
| Q |
31 |
aagcgattgatactgtatgaaggaatgagattgaaaattcagttagaatccaaatagcacagaagcgattaaagcaaactgcttcaattaattagtactc |
130 |
Q |
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| T |
45988171 |
aagcgattgatactgtatgaaggaatgagattgaaaattcagttagaatccaaatagcacagaagcgattaaagcaaactgcttcaattaattagtactc |
45988072 |
T |
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| Q |
131 |
caattagttagttgatttttcacacttgaaccgataaacaaacacgcgccagaataatttattaatactcgcttaactcttcagtctttttaattgaaca |
230 |
Q |
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| T |
45988071 |
caattagttagttgatttttcacacttgaaccgataaacaaacacgcgccagaataatttattaatactcgcttaactcttcagtctttttaattgaaca |
45987972 |
T |
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| Q |
231 |
tttaacaacaacgattttagttactacgatatacttataatctacaaaaatcgattatgaacccaacctgttaagtgcttctacaggcactgaatattgt |
330 |
Q |
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| T |
45987971 |
tttaacaacaacgattttagttactacgatatacttataatctacaaaaatcgattatgaacccaacctgttaagtgcttctacaggcactgaatattgt |
45987872 |
T |
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| Q |
331 |
ggcgccaattcatgagcttccttataagctttcttcgcttcctcgtccatcttcttcccttcat |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45987871 |
ggcgccaattcatgagcttccttataagctttcttcgcttcctcgtccatcttcttcccttcat |
45987808 |
T |
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