View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3758_high_5 (Length: 303)

Name: NF3758_high_5
Description: NF3758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3758_high_5
NF3758_high_5
[»] scaffold0277 (3 HSPs)
scaffold0277 (19-289)||(17714-17984)
scaffold0277 (23-289)||(8967-9234)
scaffold0277 (189-289)||(1-101)
[»] scaffold0419 (1 HSPs)
scaffold0419 (19-289)||(12108-12378)


Alignment Details
Target: scaffold0277 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 17714 - 17984
Alignment:
Q  19 atgtttaatatattaaaagttatatcttctccaacattagaatttgaatcctcatcctttaactattttatattctcataaatataatatgcaagtgcat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17714 atgtttaatatattaaaagttatatcttctccaacattagaatttgaatcctcatcctttaactattttatattctcataaatataatatgcaagtgcat 17813  T
Q  119 gataagttgataagaaaatactagaagactcgcatgcgttttcaggtgtgtgatgccgatgtaagaacattttgcatcttgctagtgtttatactccaag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17814 gataagttgataagaaaatactagaagactcgcatgcgttttcaggtgtgtgatgccgatgtaagaacattttgcatcttgctagtgtttatactccaag 17913  T
Q  219 atatattggtctgtttgtatctttttattggctctagataatctctggccgtttgtgttatcaggtctgtg 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  17914 atatattggtctgtttgtatctttttattggctctagataatctctggccgtttgtgttgtcaggtctgtg 17984  T

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Target: scaffold0277; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 23 - 289
Target Start/End: Original strand, 8967 - 9234
Alignment:
Q  23 ttaatatattaaaagttatatcttctccaacattagaatttgaatcctcatcctttaactattttatattctcataaatat-aatatgcaagtgcatgat 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8967 ttaatatattaaaagttatatcttctccaacattagaatttgaatcctcatcctttaactattttatattctcataaatattaatatgcaagtgcatgat 9066  T
Q  122 aagttgataagaaaatactagaagactcgcatgcgttttcaggtgtgtgatgccgatgtaagaacattttgcatcttgctagtgtttatactccaagata 221  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9067 aagttgataagaaaatactagaagactcgtatgcgttttcaggtgtgtgatgccgatgtaagaacattttgcatcttgctagtgtttatactccaagata 9166  T
Q  222 tattggtctgtttgtatctttttattggctctagataatctctggccgtttgtgttatcaggtctgtg 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9167 tattggtctgtttgtatctttttattggctctagataatctctggccgtttgtgttgtcaggtctgtg 9234  T

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Target: scaffold0277; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 189 - 289
Target Start/End: Original strand, 1 - 101
Alignment:
Q  189 tttgcatcttgctagtgtttatactccaagatatattggtctgtttgtatctttttattggctctagataatctctggccgtttgtgttatcaggtctgt 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1 tttgcatcttgctagtgtttatactccaagatatattggtctgtttgtatctttttattggctctagataatctctggccgtttgtgttgtcaggtctgt 100  T
Q  289 g 289  Q
    |    
T  101 g 101  T

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Target: scaffold0419 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 12378 - 12108
Alignment:
Q  19 atgtttaatatattaaaagttatatcttctccaacattagaatttgaatcctcatcctttaactattttatattctcataaatataatatgcaagtgcat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12378 atgtttaatatattaaaagttatatcttctccaacattagaatttgaatcctcatcctttaactattttatattctcataaatataatatgcaagtgcat 12279  T
Q  119 gataagttgataagaaaatactagaagactcgcatgcgttttcaggtgtgtgatgccgatgtaagaacattttgcatcttgctagtgtttatactccaag 218  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12278 gataagttgataagaaaatactagaagactcgtatgcgttttcaggtgtgtgatgccgatgtaagaacattttgcatcttgctagtgtttatactccaag 12179  T
Q  219 atatattggtctgtttgtatctttttattggctctagataatctctggccgtttgtgttatcaggtctgtg 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  12178 atatattggtctgtttgtatctttttattggctctagataatctctggccgtttgtgttgtcaggtctgtg 12108  T

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