View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3758_low_1 (Length: 419)
Name: NF3758_low_1
Description: NF3758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3758_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 27 - 312
Target Start/End: Original strand, 22845931 - 22846227
Alignment:
| Q |
27 |
catttaaacctcttttaaattatgtcgtgtctattatgcagtttctcgtgaatgtagggagtttgttactttataacggtgtttgtattctatcgtgtaa |
126 |
Q |
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| T |
22845931 |
catttaaacctcatttaaattatgtcgtttctattatgcagtttctcatgaatgtagggagtttgttactttataatggtgtttgtattctatcgtgtaa |
22846030 |
T |
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| Q |
127 |
tgaaaacaagg---------attcagcttttccatctttctaaggaaactcaccccttttcgaattgggataactaatgtttctctaacaattata--tc |
215 |
Q |
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| T |
22846031 |
tgaaaacaaggcaagtaattattcagcttttccatctttctaaggaaactcacccattttcgaattgggataactaatgcttctctaacaattatatatc |
22846130 |
T |
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| Q |
216 |
ggtgaaccaaatccaaaatatgaaattgccaagaaagagtagtgtttgtgttgtcacaatcacgaatttaaattgcttagacatattcacaaatata |
312 |
Q |
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| T |
22846131 |
ggtgaaccaaatccaaaatatgaaattgccaagaaagagtaatgtttgtgttgtcacaatcacgaatttaaattgtttagacatattcacaaatata |
22846227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 363 - 400
Target Start/End: Original strand, 22846275 - 22846312
Alignment:
| Q |
363 |
cactcttgaggatcccacaagagttaggagtaggacaa |
400 |
Q |
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| T |
22846275 |
cactcttgaggatcccacaagagttaggagtaggacaa |
22846312 |
T |
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