View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3758_low_10 (Length: 240)
Name: NF3758_low_10
Description: NF3758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3758_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 34527602 - 34527457
Alignment:
| Q |
1 |
tgtcaagtctttaacttagctcaggaaaattttgttcttaatttggatgaggttaaaaattaaacattttctttgttatggagtttttaaaactgaatag |
100 |
Q |
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| T |
34527602 |
tgtcaagtcttaaacttagctcaggaaaattttgttcttaatttggatgaggttaaaaattaaacattttctttgttatggagtttttaaaactgaatag |
34527503 |
T |
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| Q |
101 |
gattatcatgaaaacctttaaaccaaatcctttacaaatgtttgct |
146 |
Q |
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| T |
34527502 |
gattatcatgaaaacctttaaaccaaatcctttacaaatgtttgct |
34527457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 48 - 149
Target Start/End: Complemental strand, 27633707 - 27633606
Alignment:
| Q |
48 |
tgaggttaaaaattaaacattttctttgttatggagtttttaaaactgaataggattatcatgaaaacctttaaaccaaatcctttacaaatgtttgctg |
147 |
Q |
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| T |
27633707 |
tgaggttaaaaattaaaccttttcattgttatggagtttttaaaactcaatgggattattatgaaaacctttaaaccaaatcctttacaaatgtttgctg |
27633608 |
T |
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| Q |
148 |
aa |
149 |
Q |
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|| |
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| T |
27633607 |
aa |
27633606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 48 - 149
Target Start/End: Complemental strand, 34518528 - 34518427
Alignment:
| Q |
48 |
tgaggttaaaaattaaacattttctttgttatggagtttttaaaactgaataggattatcatgaaaacctttaaaccaaatcctttacaaatgtttgctg |
147 |
Q |
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|||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
34518528 |
tgaggttaaaaattaaaccttttcgttgttatggagtttttaaaactgaatgggattattatgaaaaccttcaaaccaaatcctttacaaatgtttgctg |
34518429 |
T |
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| Q |
148 |
aa |
149 |
Q |
| |
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|| |
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| T |
34518428 |
aa |
34518427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 73 - 149
Target Start/End: Complemental strand, 27618143 - 27618067
Alignment:
| Q |
73 |
ttgttatggagtttttaaaactgaataggattatcatgaaaacctttaaaccaaatcctttacaaatgtttgctgaa |
149 |
Q |
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|||||||||||||||| ||||||| || ||||||||||||| ||| |||||||||| |||| ||||| ||||||||| |
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| T |
27618143 |
ttgttatggagttttttaaactgattaagattatcatgaaagcctctaaaccaaattcttttcaaatctttgctgaa |
27618067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 149
Target Start/End: Complemental strand, 34506939 - 34506863
Alignment:
| Q |
73 |
ttgttatggagtttttaaaactgaataggattatcatgaaaacctttaaaccaaatcctttacaaatgtttgctgaa |
149 |
Q |
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|||||||||||||||| ||||||| || ||||||||||||| ||| ||||||||| |||| ||||| |||| |||| |
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| T |
34506939 |
ttgttatggagttttttaaactgattaagattatcatgaaagcctctaaaccaaactcttttcaaatctttgttgaa |
34506863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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