View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3758_low_3 (Length: 343)

Name: NF3758_low_3
Description: NF3758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3758_low_3
NF3758_low_3
[»] chr7 (15 HSPs)
chr7 (126-325)||(20296610-20296809)
chr7 (134-325)||(20292192-20292383)
chr7 (138-325)||(20229237-20229424)
chr7 (127-325)||(20261809-20262007)
chr7 (143-325)||(20286830-20287012)
chr7 (197-325)||(20281762-20281890)
chr7 (149-325)||(20170359-20170535)
chr7 (149-325)||(20172352-20172528)
chr7 (126-323)||(20301386-20301583)
chr7 (208-325)||(20092387-20092506)
chr7 (223-325)||(20271474-20271576)
chr7 (234-325)||(20241283-20241374)
chr7 (133-323)||(20064823-20065013)
chr7 (192-321)||(19936641-19936770)
chr7 (192-321)||(19967780-19967909)
[»] chr4 (3 HSPs)
chr4 (3-126)||(55216247-55216370)
chr4 (137-325)||(40826129-40826317)
chr4 (133-286)||(40821484-40821637)


Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 126 - 325
Target Start/End: Original strand, 20296610 - 20296809
Alignment:
Q  126 cagctgctgttcaaatctgttttctgttttatccattctgttttgcaatttgttacacatgagtattgccatagacactataacatcttcccaattcatc 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20296610 cagctgctgttcaaatctgttttctgttttatccattctgttttgcaatttgttacacatgagtattgccatagacactataacatcttcccaattcatc 20296709  T
Q  226 aaggaccctgaaactctaatctcaaaagatggtaacttcacctttggatgctttagtcctataaactctacaaatcgctatgttggaatttggtggaagt 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20296710 aaggaccctgaaactctaatctcaaaagatggtaacttcacctttggatgctttagtcctataaactctacaaatcgctatgttggaatttggtggaagt 20296809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 134 - 325
Target Start/End: Original strand, 20292192 - 20292383
Alignment:
Q  134 gttcaaatctgttttctgttttatccattctgttttgcaatttgttacacatgagtattgccatagacactataacatcttcccaattcatcaaggaccc 233  Q
    |||||||| || | |||||| | | |||| |||||||| ||||||||||  | | |||||||||| |||| || ||||| |||||||||||||||||| |    
T  20292192 gttcaaatatgctctctgttctgttcattttgttttgctatttgttacaagttaatattgccataaacaccatcacatcatcccaattcatcaaggacgc 20292291  T
Q  234 tgaaactctaatctcaaaagatggtaacttcacctttggatgctttagtcctataaactctacaaatcgctatgttggaatttggtggaagt 325  Q
    ||||||||| ||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  20292292 tgaaactcttatctccaaagatggtaacttcacctttggattctttagtcctaaaaactctacaaatcgctacgttggaatttggtggaagt 20292383  T

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Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 138 - 325
Target Start/End: Original strand, 20229237 - 20229424
Alignment:
Q  138 aaatctgttttctgttttatccattctgttttgcaatttgttacacatgagtattgccatagacactataacatcttcccaattcatcaaggaccctgaa 237  Q
    |||||||||||||||||||| |||| ||| |||| ||||| ||||  | ||| |||  |||||||| || ||||| || ||||| ||||| |||||||||    
T  20229237 aaatctgttttctgttttattcattttgtgttgctatttggtacatgttagtgttggtatagacaccatcacatcatctcaatttatcaaagaccctgaa 20229336  T
Q  238 actctaatctcaaaagatggtaacttcacctttggatgctttagtcctataaactctacaaatcgctatgttggaatttggtggaagt 325  Q
    ||||||||||| ||||||||||||||||||||||||| |||||| |||| ||| |||||||| ||||| |||||||||||||||||||    
T  20229337 actctaatctccaaagatggtaacttcacctttggattctttagccctaaaaattctacaaaccgctacgttggaatttggtggaagt 20229424  T

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Target: chr7; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 127 - 325
Target Start/End: Original strand, 20261809 - 20262007
Alignment:
Q  127 agctgctgttcaaatctgttttctgttttatccattctgttttgcaatttgttacacatgagtattgccatagacactataacatcttcccaattcatca 226  Q
    |||| |||| || |||||||||||||| ||| |||| ||| |||| ||||| ||||  | ||| |||  |||||||| || ||||| || ||||| ||||    
T  20261809 agctactgtgcatatctgttttctgttgtattcattttgtgttgctatttggtacatgttagtgttggtatagacaccatcacatcatctcaatttatca 20261908  T
Q  227 aggaccctgaaactctaatctcaaaagatggtaacttcacctttggatgctttagtcctataaactctacaaatcgctatgttggaatttggtggaagt 325  Q
    | |||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||| ||| |||||||| ||||| |||||||||||||||||||    
T  20261909 aagaccctgaaactctaatctccaaagatggtaacttcacctttggattctttagccctaaaaattctacaaaccgctacgttggaatttggtggaagt 20262007  T

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Target: chr7; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 143 - 325
Target Start/End: Original strand, 20286830 - 20287012
Alignment:
Q  143 tgttttctgttttatccattctgttttgcaatttgttacacatgagtattgccatagacactataacatcttcccaattcatcaaggaccctgaaactct 242  Q
    ||||||||||||| |   |||||| |||| ||||| ||||  |  |||||||||| ||  | || ||||| |||||||||||||| ||||||| ||||||    
T  20286830 tgttttctgttttgtttcttctgtgttgctatttgctacaagtcggtattgccatcgaagccatcacatcatcccaattcatcaaagaccctggaactct 20286929  T
Q  243 aatctcaaaagatggtaacttcacctttggatgctttagtcctataaactctacaaatcgctatgttggaatttggtggaagt 325  Q
    | |||| ||||||||||| ||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  20286930 actctccaaagatggtaatttcacctttggattctttagccctaaaaactctacaaatcgctatgttggaatttggtggaagt 20287012  T

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Target: chr7; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 197 - 325
Target Start/End: Original strand, 20281762 - 20281890
Alignment:
Q  197 tagacactataacatcttcccaattcatcaaggaccctgaaactctaatctcaaaagatggtaacttcacctttggatgctttagtcctataaactctac 296  Q
    |||||||||||||||| || ||||| ||||| |||||||||||||||||||| |||||||||||||||||||| |||| |||||| | || ||| |||||    
T  20281762 tagacactataacatcatctcaatttatcaaagaccctgaaactctaatctccaaagatggtaacttcaccttgggattctttagccgtagaaattctac 20281861  T
Q  297 aaatcgctatgttggaatttggtggaagt 325  Q
    ||||||| |||||||||||||||||||||    
T  20281862 aaatcgcaatgttggaatttggtggaagt 20281890  T

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Target: chr7; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 149 - 325
Target Start/End: Complemental strand, 20170535 - 20170359
Alignment:
Q  149 ctgttttatccattctgttttgcaatttgttacacatgagtattgccatagacactataacatcttcccaattcatcaaggaccctgaaactctaatctc 248  Q
    ||||||||| |||| ||| |||| ||||| ||||  | ||| |||  |||||||| || ||||| || ||||| ||||| ||||||||||||||||||||    
T  20170535 ctgttttattcattttgtgttgctatttgctacatgttagtgttggtatagacaccatcacatcatctcaatttatcaaagaccctgaaactctaatctc 20170436  T
Q  249 aaaagatggtaacttcacctttggatgctttagtcctataaactctacaaatcgctatgttggaatttggtggaagt 325  Q
     ||||| ||||||||||||||||||| |||||| |||| ||| |||||||| ||||| |||||||||||||||||||    
T  20170435 caaagacggtaacttcacctttggattctttagccctaaaaattctacaaaccgctacgttggaatttggtggaagt 20170359  T

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Target: chr7; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 149 - 325
Target Start/End: Complemental strand, 20172528 - 20172352
Alignment:
Q  149 ctgttttatccattctgttttgcaatttgttacacatgagtattgccatagacactataacatcttcccaattcatcaaggaccctgaaactctaatctc 248  Q
    ||||||||| |||| ||| |||| ||||| ||||  | ||| |||  |||||||| || ||||| || ||||| ||||| ||||||||||||||||||||    
T  20172528 ctgttttattcattttgtgttgctatttgctacatgttagtgttggtatagacaccatcacatcatctcaatttatcaaagaccctgaaactctaatctc 20172429  T
Q  249 aaaagatggtaacttcacctttggatgctttagtcctataaactctacaaatcgctatgttggaatttggtggaagt 325  Q
     ||||| ||||||||||||||||||| |||||| |||| ||| |||||||| ||||| |||||||||||||||||||    
T  20172428 caaagacggtaacttcacctttggattctttagccctaaaaattctacaaaccgctacgttggaatttggtggaagt 20172352  T

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Target: chr7; HSP #9
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 126 - 323
Target Start/End: Original strand, 20301386 - 20301583
Alignment:
Q  126 cagctgctgttcaaatctgttttctgttttatccattctgttttgcaatttgttacacatgagtattgccatagacactataacatcttcccaattcatc 225  Q
    |||| |||||||||||||||| | |||||| | ||||||||||| | |||||||||   | ||||| |  |||||||| || ||||| ||||||||||||    
T  20301386 cagcagctgttcaaatctgttctttgttttgttcattctgttttcctatttgttacgtgttagtatcggtatagacaccatcacatcatcccaattcatc 20301485  T
Q  226 aaggaccctgaaactctaatctcaaaagatggtaacttcacctttggatgctttagtcctataaactctacaaatcgctatgttggaatttggtggaa 323  Q
    |||||||||||||||||| | || |||||||||  ||   ||||||||| |||||| |||  ||| |||||||||||||| |||||||||||||||||    
T  20301486 aaggaccctgaaactctactttccaaagatggttcctatgcctttggattctttagccctgaaaattctacaaatcgctacgttggaatttggtggaa 20301583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 208 - 325
Target Start/End: Complemental strand, 20092506 - 20092387
Alignment:
Q  208 acatcttcccaattcatcaa--ggaccctgaaactctaatctcaaaagatggtaacttcacctttggatgctttagtcctataaactctacaaatcgcta 305  Q
    ||||| |||||||||||||   ||||||||||| ||||||||| |||| |||||||||||||||||||| |||||| |||| ||||||||||| ||||||    
T  20092506 acatcatcccaattcatcacacggaccctgaaaatctaatctccaaaggtggtaacttcacctttggattctttagccctacaaactctacaagtcgcta 20092407  T
Q  306 tgttggaatttggtggaagt 325  Q
     |||||||||||||||||||    
T  20092406 cgttggaatttggtggaagt 20092387  T

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Target: chr7; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 223 - 325
Target Start/End: Original strand, 20271474 - 20271576
Alignment:
Q  223 atcaaggaccctgaaactctaatctcaaaagatggtaacttcacctttggatgctttagtcctataaactctacaaatcgctatgttggaatttggtgga 322  Q
    ||||| ||||||||| |||||| ||| |||||||||||||||||||| |||| ||||||| ||| ||| |||||||| ||||||||||||||||||||||    
T  20271474 atcaaagaccctgaagctctaacctccaaagatggtaacttcaccttgggattctttagtgctaaaaattctacaaaccgctatgttggaatttggtgga 20271573  T
Q  323 agt 325  Q
    |||    
T  20271574 agt 20271576  T

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Target: chr7; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 234 - 325
Target Start/End: Original strand, 20241283 - 20241374
Alignment:
Q  234 tgaaactctaatctcaaaagatggtaacttcacctttggatgctttagtcctataaactctacaaatcgctatgttggaatttggtggaagt 325  Q
    ||||||||||||||| ||||| ||||||||||| ||||||| |||||| |||| ||| |||||||| ||||| |||||||||||||||||||    
T  20241283 tgaaactctaatctccaaagacggtaacttcacttttggattctttagccctaaaaattctacaaaccgctacgttggaatttggtggaagt 20241374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 133 - 323
Target Start/End: Complemental strand, 20065013 - 20064823
Alignment:
Q  133 tgttcaaatctgttttctgttttatccattctgttttgcaatttgttacacatgagtattgccatagacactataacatcttcccaattcatcaaggacc 232  Q
    |||||||||||||| |  ||||| | |||| ||||||   ||||||||||  | ||||| |  |||||||| || ||||| |||||||||||||||||||    
T  20065013 tgttcaaatctgttgttagttttgttcattgtgtttttgtatttgttacatgttagtatcggtatagacaccatcacatcatcccaattcatcaaggacc 20064914  T
Q  233 ctgaaactctaatctcaaaagatggtaacttcacctttggatgctttagtcctataaactctacaaatcgctatgttggaatttggtggaa 323  Q
    ||||||| ||| |||| |||||||||  ||   ||||||||| |||||| |||  ||| |||| ||||||||| | |||||||||||||||    
T  20064913 ctgaaacactactctccaaagatggttcctatgcctttggattctttagccctggaaattctataaatcgctacgctggaatttggtggaa 20064823  T

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Target: chr7; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 192 - 321
Target Start/End: Original strand, 19936641 - 19936770
Alignment:
Q  192 tgccatagacactataacatcttcccaattcatcaaggaccctgaaactctaatctcaaaagatggtaacttcacctttggatgctttagtcctataaac 291  Q
    |||||||||||| || |||||  | || || |||||||||||||||||||||| ||| ||   ||||||||||||||| || |  |||||||||  |||     
T  19936641 tgccatagacaccattacatcaactcagtttatcaaggaccctgaaactctaagctccaagagtggtaacttcaccttaggcttttttagtcctgaaaat 19936740  T
Q  292 tctacaaatcgctatgttggaatttggtgg 321  Q
    ||||| ||||| ||||||||||||||||||    
T  19936741 tctacgaatcgttatgttggaatttggtgg 19936770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 192 - 321
Target Start/End: Original strand, 19967780 - 19967909
Alignment:
Q  192 tgccatagacactataacatcttcccaattcatcaaggaccctgaaactctaatctcaaaagatggtaacttcacctttggatgctttagtcctataaac 291  Q
    |||||||||||| || |||||  | || || |||||||||||||||||||||| ||| ||   ||||||||||||||| || |  |||||||||  |||     
T  19967780 tgccatagacaccattacatcaactcagtttatcaaggaccctgaaactctaagctccaagagtggtaacttcaccttaggcttttttagtcctgaaaat 19967879  T
Q  292 tctacaaatcgctatgttggaatttggtgg 321  Q
    ||||| ||||| ||||||||||||||||||    
T  19967880 tctacgaatcgttatgttggaatttggtgg 19967909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 3 - 126
Target Start/End: Complemental strand, 55216370 - 55216247
Alignment:
Q  3 agtttcctttaatcacgaagtcgcacctgaactcgaagcgctagccctttggctccagaaagaagaatctcccctgcagtggagcgttgctttgtttgct 102  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||    
T  55216370 agtttcctttaatcacgaagtcgcacctgaactcgaagtgctagccctttggctccagaaagaagagtctcccctgcagcggaacgttgctttgtttgct 55216271  T
Q  103 cgggctgttccggtgaggaagggc 126  Q
    ||||||||||||||||||||||||    
T  55216270 cgggctgttccggtgaggaagggc 55216247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 137 - 325
Target Start/End: Complemental strand, 40826317 - 40826129
Alignment:
Q  137 caaatctgttttctgttttatccattctgttttgcaatttgttacacatgagtattgccatagacactataacatcttcccaattcatcaaggaccctga 236  Q
    ||||| ||||||||||||| |  ||||||| |||| |||   ||||  | |||||||| |||||||| || ||||| || ||||||||||||||||||||    
T  40826317 caaatttgttttctgttttgtttattctgtgttgctattccctacaatttagtattgcaatagacaccatcacatcatctcaattcatcaaggaccctga 40826218  T
Q  237 aactctaatctcaaaagatggtaacttcacctttggatgctttagtcctataaactctacaaatcgctatgttggaatttggtggaagt 325  Q
    ||||||| |||| |||||||||||||||||||| |||| |||||| ||||  || |||||||||||||| |||||||||||||||||||    
T  40826217 aactctactctccaaagatggtaacttcaccttgggattctttagccctaagaattctacaaatcgctacgttggaatttggtggaagt 40826129  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 133 - 286
Target Start/End: Complemental strand, 40821637 - 40821484
Alignment:
Q  133 tgttcaaatctgttttctgttttatccattctgttttgcaatttgttacacatgagtattgccatagacactataacatcttcccaattcatcaaggacc 232  Q
    ||||||||| || | |||||| | | |||| ||||||||| |||||||||  | ||||||||||||  ||  || ||||| ||||| | ||| ||||||     
T  40821637 tgttcaaatatgctctctgttctgttcattttgttttgcactttgttacaagttagtattgccataaccaacatcacatcatcccagtacataaaggaca 40821538  T
Q  233 ctgaaactctaatctcaaaagatggtaacttcacctttggatgctttagtccta 286  Q
    |||||||||| ||||| ||||||||||||||||||||||||| |||||| ||||    
T  40821537 ctgaaactcttatctccaaagatggtaacttcacctttggattctttagcccta 40821484  T

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