View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3758_low_7 (Length: 252)

Name: NF3758_low_7
Description: NF3758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3758_low_7
NF3758_low_7
[»] chr3 (5 HSPs)
chr3 (24-243)||(34527750-34527969)
chr3 (128-205)||(27627524-27627601)
chr3 (128-205)||(34513313-34513390)
chr3 (24-73)||(27633921-27633970)
chr3 (194-243)||(27634001-27634053)
[»] chr6 (4 HSPs)
chr6 (128-217)||(24486465-24486555)
chr6 (128-242)||(24468169-24468286)
chr6 (128-217)||(24485746-24485835)
chr6 (128-243)||(24472475-24472595)
[»] chr2 (2 HSPs)
chr2 (128-242)||(10527955-10528072)
chr2 (140-242)||(10534867-10534972)
[»] scaffold1215 (1 HSPs)
scaffold1215 (140-242)||(2055-2160)
[»] chr1 (1 HSPs)
chr1 (132-177)||(21991125-21991170)


Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 24 - 243
Target Start/End: Original strand, 34527750 - 34527969
Alignment:
Q  24 caacctttctcatctccagaaatactgtgatcgtcaacctcattcgtcatacaaatatttggtggacttgtaattctgacccttcttagaatcctcatgt 123  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34527750 caacctttctcatctccagaaatactgtgatcatcaacctcattcgtcatacaaatatttggtggacttgtaattctgacccttcttagaatcctcatgt 34527849  T
Q  124 cttcttcattgatattagaaagttcaagattcattgaagcgaaattgtcaaaaacagaagaatcttcaggcacctcagtaggtgttgttgaagatgaact 223  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34527850 cttcttcattgatattagaaagttcaagattcattgaagtgaaattgtcaaaaacagaagaatcttcaggcacctcagtaggtgttgttgaagatgaact 34527949  T
Q  224 caagttgttttcctctgtgc 243  Q
    ||||||||||||||||||||    
T  34527950 caagttgttttcctctgtgc 34527969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 27627524 - 27627601
Alignment:
Q  128 ttcattgatattagaaagttcaagattcattgaagcgaaattgtcaaaaacagaagaatcttcaggcacctcagtagg 205  Q
    |||||||| || ||| |||||||||||||||||||| ||||| |||||| | ||||||||||  |||||| |||||||    
T  27627524 ttcattgaaatcagatagttcaagattcattgaagccaaattttcaaaatctgaagaatcttgtggcaccacagtagg 27627601  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 34513313 - 34513390
Alignment:
Q  128 ttcattgatattagaaagttcaagattcattgaagcgaaattgtcaaaaacagaagaatcttcaggcacctcagtagg 205  Q
    |||||||| || ||| |||||||||||||||||||| ||||| |||||| | ||||||||||  |||||| |||||||    
T  34513313 ttcattgaaatcagatagttcaagattcattgaagccaaattttcaaaatctgaagaatcttgtggcaccacagtagg 34513390  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 27633921 - 27633970
Alignment:
Q  24 caacctttctcatctccagaaatactgtgatcgtcaacctcattcgtcat 73  Q
    ||||||||||||||  | ||||||||||||||||||||||||||| ||||    
T  27633921 caacctttctcatccaccgaaatactgtgatcgtcaacctcattcatcat 27633970  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 243
Target Start/End: Original strand, 27634001 - 27634053
Alignment:
Q  194 cacctcagtaggtgttgttgaagatgaa-ctc--aagttgttttcctctgtgc 243  Q
    |||||||||||||||||||||||||||| |||  | |||||||||||||||||    
T  27634001 cacctcagtaggtgttgttgaagatgaagctccaatgttgttttcctctgtgc 27634053  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 128 - 217
Target Start/End: Complemental strand, 24486555 - 24486465
Alignment:
Q  128 ttcattgatattagaaagttcaagattcattgaagcgaaattgt-caaaaacagaagaatcttcaggcacctcagtaggtgttgttgaaga 217  Q
    ||||||||||| |||||||||||| ||||||||||  ||||||| |||||||||||||| |||  |||| |||||||||||||||||||||    
T  24486555 ttcattgatatcagaaagttcaagcttcattgaagaaaaattgtacaaaaacagaagaaccttgtggcatctcagtaggtgttgttgaaga 24486465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 242
Target Start/End: Complemental strand, 24468286 - 24468169
Alignment:
Q  128 ttcattgatattagaaagttcaagattcattgaagcgaaattgtcaaaaacagaagaatcttcaggcacctcagtaggtgttgttgaagatgaa---ctc 224  Q
    ||||||||||| | |||||||||| |||||||| || ||||||| |||||| |||||| |||   ||| ||||||| |||||||| ||||||||   |||    
T  24468286 ttcattgatatcataaagttcaagcttcattgacgcaaaattgtaaaaaacggaagaaccttgttgcatctcagtaagtgttgtttaagatgaagcgctc 24468187  T
Q  225 aagttgttttcctctgtg 242  Q
      ||||||||||||||||    
T  24468186 tcgttgttttcctctgtg 24468169  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 217
Target Start/End: Complemental strand, 24485835 - 24485746
Alignment:
Q  128 ttcattgatattagaaagttcaagattcattgaagcgaaattgtcaaaaacagaagaatcttcaggcacctcagtaggtgttgttgaaga 217  Q
    ||||||||||| |||||||||||| ||||||||||| ||| ||| |||||| ||| |  |||  |||| || ||||||||||||||||||    
T  24485835 ttcattgatatcagaaagttcaagcttcattgaagcaaaactgtaaaaaacggaaaagccttgtggcatcttagtaggtgttgttgaaga 24485746  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 243
Target Start/End: Complemental strand, 24472595 - 24472475
Alignment:
Q  128 ttcattgatattagaaagttcaagattcattgaagcgaaattgtcaaa--aacagaagaatcttcaggcacctcagtaggtgttgttgaagatgaa---c 222  Q
    |||||||||||||||||||||||| ||||||||||  |||  || |||  ||| ||| || |||  |||| |||||||||||||||||||||  ||   |    
T  24472595 ttcattgatattagaaagttcaagcttcattgaagaaaaaccgtaaaaagaacggaaaaaccttggggcatctcagtaggtgttgttgaagacaaagcgc 24472496  T
Q  223 tcaagttgttttcctctgtgc 243  Q
    ||| |||||||||||||||||    
T  24472495 tcacgttgttttcctctgtgc 24472475  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 242
Target Start/End: Original strand, 10527955 - 10528072
Alignment:
Q  128 ttcattgatattagaaagttcaagattcattgaagcgaaattgtcaaaaacagaagaatcttcaggcacctcagtaggtgttgttgaagatgaa---ctc 224  Q
    ||||| ||||| |||||||| ||| ||||| ||| | ||||||||||||||||||||| |||  ||||||||||||||||||| || |||||||   | |    
T  10527955 ttcatagatatcagaaagtttaagcttcatcgaatcaaaattgtcaaaaacagaagaaccttggggcacctcagtaggtgttgctggagatgaagtgcgc 10528054  T
Q  225 aagttgttttcctctgtg 242  Q
    | ||||||||||||||||    
T  10528055 atgttgttttcctctgtg 10528072  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 140 - 242
Target Start/End: Original strand, 10534867 - 10534972
Alignment:
Q  140 agaaagttcaagattcattgaagcgaaattgtcaaaaacagaagaatcttcaggcacctcagtaggtgttgttgaagatgaa---ctcaagttgttttcc 236  Q
    |||||||| ||| ||||| ||| | ||||||| ||||||||||||| |||  | ||||||||||||||||| || |||||||   |||| ||||||||||    
T  10534867 agaaagtttaagcttcatcgaatcaaaattgttaaaaacagaagaaccttgtgtcacctcagtaggtgttggtggagatgaagagctcatgttgttttcc 10534966  T
Q  237 tctgtg 242  Q
    ||||||    
T  10534967 tctgtg 10534972  T

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Target: scaffold1215 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold1215
Description:

Target: scaffold1215; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 140 - 242
Target Start/End: Original strand, 2055 - 2160
Alignment:
Q  140 agaaagttcaagattcattgaagcgaaattgtcaaaaacagaagaatcttcaggcacctcagtaggtgttgttgaagatgaa---ctcaagttgttttcc 236  Q
    |||||||| ||| ||||| ||| | ||||||| ||||||||||||| |||  | ||||||||||||||||| || |||||||   |||| ||||||||||    
T  2055 agaaagtttaagcttcatcgaatcaaaattgttaaaaacagaagaaccttgtgtcacctcagtaggtgttggtggagatgaagagctcatgttgttttcc 2154  T
Q  237 tctgtg 242  Q
    ||||||    
T  2155 tctgtg 2160  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 21991125 - 21991170
Alignment:
Q  132 ttgatattagaaagttcaagattcattgaagcgaaattgtcaaaaa 177  Q
    |||||||||||||| ||||||||||||||||  | |||||||||||    
T  21991125 ttgatattagaaagctcaagattcattgaagacagattgtcaaaaa 21991170  T

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