View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3758_low_9 (Length: 250)
Name: NF3758_low_9
Description: NF3758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3758_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 10400494 - 10400279
Alignment:
| Q |
19 |
gtgaaaccctctcaactatattatacattagttgagaggagtacctaatagaaaacttgcaagttgttgcaccaatttccatgtcatagtcacatgatgt |
118 |
Q |
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| T |
10400494 |
gtgaaaccctctcaactatattatacattagttgagaggagtacctaatagaaaacttgcaatttgttgcaccaatttccatgtcatagtcacatgatgt |
10400395 |
T |
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| Q |
119 |
tcttctgttaaggtagcaccaatagcacatctaatcacaaaagatccttcaacctcaccatgactcatgtatgctttgccagaactgttaattaaatcta |
218 |
Q |
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| T |
10400394 |
tcttctgttaaggtagcaccaatagcacatctaatcacaaaagatccttcaacctcaccatgactcatgtatgctttgccagaactattaattaaatcta |
10400295 |
T |
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| Q |
219 |
gcaatttatgattcat |
234 |
Q |
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|||||||||||||||| |
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| T |
10400294 |
gcaatttatgattcat |
10400279 |
T |
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Back To:
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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 11005520 - 11005453
Alignment:
| Q |
122 |
tctgttaaggtagcaccaatagcacatctaatcacaaaagatccttcaacctcaccatgactcatgta |
189 |
Q |
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| T |
11005520 |
tctgttaaagttgctccaatagcacacctaatcacaaaaactccttcaaccacagcatgagtcatgta |
11005453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 11015848 - 11015781
Alignment:
| Q |
122 |
tctgttaaggtagcaccaatagcacatctaatcacaaaagatccttcaacctcaccatgactcatgta |
189 |
Q |
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| T |
11015848 |
tctgttaaagttgctccaatagcacacctaatcacaaaaactccttcaaccacagcatgagtcatgta |
11015781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 189
Target Start/End: Complemental strand, 21198868 - 21198796
Alignment:
| Q |
117 |
gttcttctgttaaggtagcaccaatagcacatctaatcacaaaagatccttcaacctcaccatgactcatgta |
189 |
Q |
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|||| |||||||| || || ||||||||||| |||||||||||| |||||||||| || |||| ||||||| |
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| T |
21198868 |
gttcctctgttaaagttgctccaatagcacacctaatcacaaaaactccttcaaccacagcatgcgtcatgta |
21198796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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